Branchiostoma floridae (Florida lancelet): 118428144
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Entry
118428144 CDS
T01074
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118428144
03041 Spliceosome [BR:
bfo03041
]
118428144
03036 Chromosome and associated proteins [BR:
bfo03036
]
118428144
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118428144
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118428144
mRNA cycle factors
Common to processing body (P body) and stress granule
118428144
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118428144
Chromosome and associated proteins [BR:
bfo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118428144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
118428144
NCBI-ProteinID:
XP_035694023
UniProt:
A0A9J7M488
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All DBs
Position
12:complement(8368304..8385933)
Genome browser
AA seq
729 aa
AA seq
DB search
MSHDGRQNGPSLDQQLAGLDLNAAPGQGGAGGGIDKGRYIPPHVRNRQTNDFGPPNSGGF
NRLDSGYGGAPHLSDGGFGAYNGAAIPGYGGGNFQNFQRRDNFGNFGGPRGFAGPPPFVN
AAIPQQNFNNFGGRGGGRPYQNQGGRGGGFNRNFGGRDNRNFGGGNQWDGGRQNNRWDRS
NEQPSNNRWSRDDRKAGGDNYPPPEDADWSKPLPRNERMERELFGKSNTGINFDKYEDIP
VEATGESCPQHISEFTDLDLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTG
SGKTAAFLIPILSLIYENGPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESK
KFAYRSHVRPCVVYGGADIGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILD
EADRMLDMGFEPQIRRIVEQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGR
VGSTSDNITQKVVWVDEQDKRSFLLDLLNATGKEGADSLTLTFVETKKGADSLEAFLYSE
GYPVSSIHGDRSQREREDALMTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDE
YVHRIGRTGRVGNLGLATSFFNDKNRNVVRDLVDILIESKQELPPWLESMAYEERRQQSS
GRNRGRNRFQGGFGSRDYRQQNRSGGAQQRGGAPSYGGFTHYQPAQGYGGYPPGAMRQHD
QQSFDWWGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgatggaagacaaaatggacctagtctagatcagcagttggctggcctagac
ttgaacgctgctcctgggcagggaggagcaggtggaggaatcgataagggaaggtacata
cctcctcatgtgcgcaaccgtcagaccaacgattttggccccccaaattctggcgggttc
aaccgtttggactctggctatggcggtgcgccccatctcagtgatggcggcttcggcgcc
tacaacggggccgcgatcccggggtatggcggtggaaacttccagaatttccaacgccgt
gacaactttgggaacttcgggggccccagaggttttgcgggcccgcctccttttgtgaat
gctgcgattcctcagcagaacttcaataacttcggcgggcgcgggggcggccgtccgtac
caaaaccagggagggcgtggtggggggttcaaccgcaacttcggaggaagggacaaccgc
aactttggcgggggtaaccagtgggatggagggcggcagaataaccgctgggaccgcagc
aatgagcagccgtccaacaaccgctggagccgcgacgatcgaaaagcgggcggagacaac
taccctccgcccgaggacgctgattggagcaagccgcttcctcggaatgagcgcatggaa
agggagctgtttggaaagagcaacacgggcatcaactttgacaagtatgaggacatccct
gtggaagctacaggggagagctgcccacagcacattagtgagttcactgatctggacctg
ggtgagatcatcagtaacaacatcaagttgtccaactacatgaagcccaccccagtgcag
aagtacgccatccccattgctagggctaaccgagacctgatggcctgtgcacagaccggc
tctggaaaaactgcagcattcctgatccccattctcagtctgatctatgagaacggacct
cagggactgccacagcatggccgtcagtacggaggcagcggcagcaggaagcgatacccc
ctggccctggtgctggcgcccacccgtgagctcgcctcacagatctacgacgagtccaag
aagttcgcctaccgttcccacgtgcgcccctgcgtggtgtatggaggcgcggacatcggg
ggtcagatgcgcgaccttgagcgcgggtgccacctgctggtgggcacgcccggccgactg
gtggacatgatggagcgcggcaggatcggcctggactatatcaagtatttgattctggac
gaggctgaccgcatgctggacatggggttcgagccgcagatccggcgtattgtggagcag
gacaccatgcccggcactggcaaacgtcgcacgatgatgttctctgccaccttccctaag
gaaatccagatgctggctcgtgacttcctggacaactacatcttcctggcggtgggtcgt
gtgggcagcaccagcgacaacatcacgcagaaggtggtgtgggtggatgagcaggacaaa
cgatccttcctgctcgacctgctcaacgccacaggtaaggaaggcgcagactccctgacc
ctgacgtttgtggagaccaagaaaggagctgattccttagaggcgttcctgtacagtgag
ggctacccggtgtcgtccattcatggcgaccgctcccagcgcgagcgtgaggacgctctg
atgactttccgtacgggcgtgacgcccattttagtggcaacagctgttgccgctcgaggt
ctggacatcccaaacgtgaagcacgtgatcaactttgaccttcccagcgacattgacgag
tacgtacaccgtatcggtcgtactggccgtgttggcaacctgggattggccacctcgttc
ttcaatgacaaaaaccgcaacgtcgtgcgcgaccttgtggacatcctgatcgagtcgaag
caggagctgcccccatggctggagtccatggcgtacgaggagcgtcgccagcagagcagc
ggccgcaaccgaggccgcaacaggttccaaggcgggttcggttcccgtgactaccgccag
cagaaccgcagcggcggcgcccagcagcgagggggcgcgcccagctacggcggcttcacc
cactaccagccggcacaggggtacggcgggtaccctcccggcgccatgcgccagcacgac
cagcagtccttcgactggtggggcaactag
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