Branchiostoma floridae (Florida lancelet): 118428912
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Entry
118428912 CDS
T01074
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118428912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118428912
Enzymes [BR:
bfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118428912
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118428912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_1
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
118428912
NCBI-ProteinID:
XP_035695093
UniProt:
A0A9J7M6I7
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All DBs
Position
13:complement(8417724..8434508)
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AA seq
565 aa
AA seq
DB search
MEITRHNFKQVIDQVSEAVDEASFLCIDGEFTGLNNGPALHGFDTPQERYDKLRKGSLDF
LFVQFGLCAFKYETEESRFVARPFNFYIFPRPLNRNAPDCRFLCQASSLHFLASQGMDFN
KVFRDGIPYLSPVDEQQMRDTLDQKHATQQLHSPPFTSGTSQTSDSSRSIQVPAEHKDFI
QQTLTRIQSFIDSEEESLQLEPCNAYLRKLIYSTVKNKFSSSVYLETKVGEQNQHYFIEV
SKANEEVLKKRGEEKRQQELDELDDAVGMSKIIRMICQSGKLVIGHNMLLDVLHLVHKFS
YPLPQEIDEFKSLVNCLFPRLLDTKLMASMHPFKELVSNTTLGDLEATLGKEPFKVPVIV
FPEDFPGYETAQEHQAGYDAYITGRCFTIMANYLGKFKSQSKPALPGSALLEPFVNKLYL
MRVQDIPYVNLTGQDLKPNRDHVFHVTFPKEWKSNDLYQLFRPFGPIYIAWIDDVSAFVA
LNKKDQSDLAYKMLCEGVSYRVRRYGDHKDPNTSHGRKRPLSLPETFAPWNGEGKRLKVT
SSDVGRSVILYNILKMIMFLKRQNQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggagatcacaagacacaactttaagcaggtgatagaccaggtgtcagaagctgtggat
gaagcttcatttctgtgcattgatggagaattcacaggtttgaacaatggtccagctcta
catgggttcgacacacctcaagaacgatacgacaaacttagaaagggctctttggatttc
ctctttgtccagttcggactgtgtgctttcaaatatgagactgaagaatccaggtttgtg
gccagaccgttcaatttctacatcttccctcgaccgttgaaccgaaatgctccggactgc
cgatttctgtgccaggcctccagtttgcattttcttgcttctcaggggatggatttcaac
aaagtcttcagagatggcattccgtacttgtctcctgttgatgagcagcagatgagagac
accctggaccaaaaacacgccacacagcagctgcactcccctcccttcactagtggtaca
tcccagacctccgactccagcagatccatccaggtcccagctgaacacaaggacttcatt
cagcagactctcaccagaatacagtccttcatagacagtgaggaggagagtcttcagttg
gagccctgcaatgcatatttgcgaaagctgatctactcaacagttaaaaacaagttttca
tcttctgtttatctggaaaccaaagtaggagagcagaaccaacactacttcattgaagtc
agcaaagcaaatgaggaagtgctgaaaaagagaggagaggaaaaaagacaacaagaactg
gatgaactggacgatgctgttgggatgtctaaaatcatcaggatgatttgtcagtcgggg
aaacttgtcattggtcacaacatgctactggatgttctccaccttgtccataagttcagc
tacccactgcctcaggaaatagatgagttcaagtctcttgtaaactgtctcttcccaaga
ttactggacaccaaactgatggccagcatgcatccatttaaggaacttgtctctaacact
actctgggagacctggaggctactttagggaaagaaccattcaaagtgcctgtcatagtg
ttccctgaagacttcccaggctatgagacagcccaggagcaccaggctgggtatgatgcc
tacatcacggggaggtgcttcactatcatggccaactacttaggtaaattcaagtcccag
tccaaacctgcactgcctggatcagcacttttggagccttttgtgaacaaactctacctg
atgagagtacaagacattccatacgtcaatcttacaggacaggacttaaaacccaacaga
gaccatgtcttccatgtgaccttccccaaggagtggaagtctaacgacttgtaccaactc
ttccgaccatttggaccaatctacattgcctggattgacgatgtttcagcttttgttgct
ctgaataagaaggaccagtcagatctggcctacaaaatgctatgtgagggagtgagctac
cgagtaaggcggtacggagatcacaaagatccaaacacttctcatgggcggaagagaccc
ctgtcactcccagagacctttgcaccttggaacggggaaggaaaaaggttaaaggtcacc
agttcggatgtgggcaggtcagttattctttataacatcttgaaaatgataatgtttctg
aaaagacaaaatcaataa
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