Branchiostoma floridae (Florida lancelet): 118428947
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Entry
118428947 CDS
T01074
Name
(RefSeq) DNA topoisomerase 3-alpha-like isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03440
Homologous recombination
bfo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118428947
03460 Fanconi anemia pathway
118428947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfo03032
]
118428947
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118428947
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
118428947
DNA replication proteins [BR:
bfo03032
]
Eukaryotic type
DNA Topoisomerases
118428947
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
118428947
FA (Fanconi anemia) pathway
118428947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Zn_ribbon_recom
Lar_restr_allev
Motif
Other DBs
NCBI-GeneID:
118428947
NCBI-ProteinID:
XP_035695143
UniProt:
A0A9J7M5W4
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Position
13:complement(11782902..11794404)
Genome browser
AA seq
1098 aa
AA seq
DB search
MFSSVLVIKRINVIKLFLRTTTKSFHRTMAGRTQKVLNVAEKNDAAKAIADVLSNGRYRR
REGFSKFNKIYEFEFNILNKQSSMSMTSVSGHLLELDFKGSYQKWHSCQPVALFDAGVEK
HCPDQFKDIKRTLEREARQCQVLVIWTDCDREGENIGTEVIDVCKAVKPNIRIYRARFSD
FTPQSIISACCNLVQPDYRSSDAVNVRSELDLRIGAAFTRFQTLRLQKIFPNVLSDQVIS
YGSCQFPTLGFVVERYKAIQNFIPEMFHKLKVSHETEDGRVDFNWKRNRLFNHTACLVLY
QIVMENPIARVISVNSRPKSKWRPQPLETVELEKLASRKLRINAKETMKIAEKLYNQGFI
SYPRTETNKFSKDTDLQGLVQLQTVDPDWGGFAAGVLQRGPNPRNGNKTDNAHPPIHPTK
YTDNLQGNEKRLYEFIVRHFLACLSQDAQGQETTVEIDINGEKFTAQGLMIIARNYLDVY
PYDKWNAKVIPVFNQGETFQPSAIEMLQGQTSPPPLLTEADLIALMDKHGIGTDATHAEH
IETIKSRMYVGVQQDGRFVPGELGMGLVEGYDAMGYEMSKPHLRAELEADLKLICEGRKD
PKVVLAEQVQKYKQVFIEACAQALKLDEALGTYFGEAQPFAEQDMNPVQVSPPVRPCPQC
GESMVIKTRKDGGLMLSCMGYPDCRAVAWFPANVLEATRDEAICTRCQPGPVHKIKFKFK
RGSVPPIIPLDYLGCIGGCDETVCELFNLNYLRPQQQQHRGAGGGGRGRPVQPSRGDAGR
GRGNTRGNGPSPPRGGGNNGGPFPPRGGGGIARGNAPGVARGGSNDRRNNRGAGNTRDFH
TGNQSNMGFLGVGDSGRTPLGAVQSSGDGNAVVCICGQNARLLTVRKEGNNCGRQFYKCS
RMDNPCDFFLWADDNAPSAGDAFSVGSNNSYNSNNHNNRSTYNARGDGGNGNFNNQPGFG
DRQSHSSGDGFGGDGFDGDVPQCNCGQPSVTRTVQKEGNNKGRQFHTCVKPRGEQCGFFQ
WADAPDNSGAGDGFRGGFQGATGRGRGSRGGRGRGRGNRSNSSDGDWDQENSRKRKPPKC
GACGEIGHTKRGCRNKEF
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgtttagcagtgtgttggtgatcaagagaatcaatgtgatcaaattatttctgagaaca
acaacaaaatccttccacagaactatggccggacggacacagaaagttctgaatgtcgcc
gagaaaaacgacgcagcgaaggcgatagcagacgtactgtctaatggcaggtaccgcaga
cgagaaggcttctccaagttcaacaagatctacgagtttgagttcaacattctgaacaag
cagagctccatgtccatgacctccgtgtcaggtcacctcctagaactggacttcaagggc
agctaccaaaaatggcacagctgtcagcctgtggccttgtttgatgcaggtgtggagaaa
cactgccctgatcagtttaaggacatcaagcggacgctggaacgagaggctaggcagtgt
caggtgctggtgatatggacggactgtgatcgggagggagagaacatcgggactgaggtg
atcgatgtttgtaaggcagtcaaaccgaacatcagaatctaccgtgctcgcttttctgac
ttcacacctcagtcaataatatccgcctgttgcaaccttgtacaaccagactatcggtca
tcggatgctgtgaacgtgcgatcggagctggaccttagaatcggtgccgccttcacacga
ttccagacgctcaggctgcagaagatctttcccaatgtcctcagtgatcaggtcattagc
tatggcagctgtcagttccccacgctaggttttgttgtggagcggtacaaggcaatacag
aacttcatcccagaaatgttccacaaattgaaggtctcccacgagacagaggacggcagg
gtggacttcaactggaagcgtaaccgtctgttcaaccatacggcatgtcttgttctgtac
cagattgtgatggaaaacccgattgcccgagtgatcagtgttaacagtcgtccgaagagc
aagtggagaccacagcctttagagactgtggaacttgagaagttggcatctcggaagctg
agaatcaacgccaaggaaaccatgaagatagcagagaagttgtacaaccagggtttcatc
agctacccccgtactgagaccaacaagttctccaaggacacagacctgcagggtctggtg
cagctgcagacagtggacccagactggggagggtttgctgcaggggtgctgcagagggga
cccaacccacgcaatggaaacaagactgataatgcccatcctcccattcatccgacaaaa
tatactgataatctacagggtaacgagaagagactgtacgagttcatagttcggcacttt
ctggcctgtctgtctcaagatgcacagggacaagagacaacagtagagatagacatcaat
ggagagaagttcactgcacaaggcctgatgatcattgccagaaactaccttgatgtttat
ccctatgacaagtggaatgcaaaggtaatcccagtgtttaaccagggagaaaccttccag
ccttcagcaattgagatgctccagggacagaccagcccccctcccttgctgactgaggct
gatctgattgccttgatggataaacatgggatcggcacagatgccacccatgctgaacac
atagagacgatcaagtccaggatgtatgtgggtgtccaacaggatggcagatttgtgccc
ggggaacttggcatggggctcgtggaaggctatgatgccatgggttatgagatgtctaaa
ccccatctgagggcagagctagaggctgacttgaagctcatctgtgaaggaaggaaagac
cctaaagttgtgctagcagagcaggtacaaaagtacaagcaggtgttcattgaggcttgt
gcacaggccctgaaattagatgaggctcttggaacctactttggagaagcacaacccttt
gcagaacaagatatgaacccagtccaggtgtccccccctgtccgcccctgtccccagtgt
ggagagagcatggtcatcaagacacgcaaggacggcgggctgatgttgagttgcatgggt
taccccgactgccgagctgttgcctggttccctgctaacgttcttgaggcgacacgtgat
gaagccatttgcacaaggtgtcagcctggaccagttcacaagatcaagtttaagttcaag
agggggtctgttccacccattattcctctggattacttaggctgtattggtggttgtgat
gagactgtatgtgagctgttcaacctgaactacctccggcctcagcaacagcagcaccgt
ggtgctggtggtggtggtcgaggccgacctgtccaaccgagccgtggagatgctggaaga
gggaggggcaacaccagagggaatggcccatcacctcctagagggggtggaaacaatggt
ggtccatttcccccaagaggaggcggtggtattgccagggggaatgctcctggtgttgcc
agagggggaagtaacgatagaaggaacaatagaggtgctggcaacaccagagactttcac
actggtaaccagagcaatatgggctttcttggtgttggagactcaggacgcactcccctt
ggagctgtgcaaagttctggtgatggcaatgctgtggtgtgtatctgtgggcagaacgcc
aggctactgacagtccggaaggagggaaacaactgtggtcgacagttctacaagtgcagc
cgtatggacaacccctgtgacttcttcctctgggctgatgacaacgcaccatccgcaggg
gatgccttcagtgtgggttccaacaacagttacaacagcaacaatcacaacaacagaagt
acctacaatgccagaggggatggtggcaatggcaactttaacaaccagcctggatttggg
gacagacagagccactcatcgggagatggatttggaggagatggttttgatggagatgtt
ccacaatgtaactgtgggcagcctagtgtgacgagaacggtgcagaaggagggcaacaac
aagggccggcagttccacacctgtgtgaagcccaggggtgagcagtgtggattcttccag
tgggcagatgcacctgataacagtggggcaggagacggcttcagaggaggttttcaggga
gcaacgggtcgaggacggggcagccggggaggtcgagggcgtggcaggggtaaccgtagc
aacagcagtgatggagactgggatcaggaaaactccaggaagaggaagcctccgaagtgt
ggtgcctgtggggaaataggtcacaccaaacgtggatgtcgcaacaaagagttctga
DBGET
integrated database retrieval system
