Branchiostoma floridae (Florida lancelet): 118429124
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Entry
118429124 CDS
T01074
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118429124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118429124
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118429124
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118429124
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
PulA_N1
DUF5646
Motif
Other DBs
NCBI-GeneID:
118429124
NCBI-ProteinID:
XP_035695405
UniProt:
A0A9J7NA41
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All DBs
Position
13:16778686..16810133
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AA seq
832 aa
AA seq
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MADKRKLQGEIERCLKKVSEGVETFEDIWQKVNNATNSNQKEKYENDLKKEIKKLQRLRD
QIKTWVASNDIKDKRQLLENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
RDDTIQWLTDSIERLTLQVDQFESEVEAVQASSKKKKLDKDKQGRVDELKTLLERHRYHI
KQLETLLRMLDNSAVEVEQIKNIKDEVEYYIEASQDPDFEENEYLYDDFDMEEMGRYNHG
LEDPEKNLGTIIATSPSEIGGLMSDEVFDKEKANAEQAVELSNSSSPTPNSPSTNHSKEK
DDKKERSKSTDEPVKPVATRSSSLPSSSSTTTTANGSKTPSKSASISSSASNHIVATPPA
GPAYAAAAAGQTSTGSGSQFPIPPPPSGSAYAAAAAATPPHSAASLISENSNHSSVPAWS
SVTAHHNETSSSGTAQQPRPPVTPPTAISKPQQRIPDGQLSEATANSLNHSQGSVPSSVA
PTPPVNSAPGPIVSQTSTQMTIAANSVTSTKDLASLGLANMSSASTTSSTMSAPSTPGKS
EPLMNGPSSLNAAEYKFSQITTNLLFLFGQDQQSSESMTSLKSMAEKAVVNAGLEEHLQT
QQFSTEDSGAFSSGSAVPTTPTLSDSGRLAKISSLFSSTTTTTTDSQAPVQPPPTTEAHL
QPILGVAPLGPVPLSKDNVYGLGMLEASYHHMPHPSDSEKLRKSRGLLVSVVSRQYLPRN
PCPTPPYYPQHPLPHSDSLEFFTRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTK
YMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaaaggaaattgcaaggtgagatcgagagatgcctgaagaaggtcagtgaa
ggtgtagaaacctttgaagacatctggcaaaaggtgaataatgcaaccaactccaaccag
aaggagaaatatgagaacgatcttaagaaagaaatcaagaaactgcagcggttgagagac
cagatcaaaacatgggtagcatcaaacgacatcaaggacaaaaggcagctgcttgagaac
agaaaactcattgaaacacaaatggaaagatttaaggtggtggaaagggagaccaaaacg
aaagcgtactcaaaggaagggttggggttggcgcagaaagtagaccctgcgcagaaagag
agagacgacacaatacagtggttaacggattccattgagagactaactctgcaggtggac
cagttcgagagcgaggtcgaagctgtccaagcatcatccaagaaaaagaaactcgataag
gataaacagggaagagtagatgagttgaaaaccttgttggagaggcataggtaccacatc
aagcagttggagacgctcttaagaatgttggacaacagcgcggtggaggtagaacaaata
aaaaacatcaaggacgaggtggagtactacattgaggcatcacaggatcccgactttgag
gagaatgagtacctatatgatgattttgatatggaagaaatgggtaggtataaccatgga
ctagaagaccctgagaagaacctaggtacaatcatcgcgacgtcgccgtcagagatcggt
ggcttgatgtcggacgaagtcttcgacaaggagaaggcgaatgcggaacaggcggtggag
ctgtccaactcgagctcacccacgccaaacagtcccagcaccaaccattccaaggagaag
gatgacaagaaggagagaagcaagtcaacagatgagccggtcaaacctgtagcaacgaga
tcatcctcgttgccaagctcctcatcaacaacaacaactgcaaatggcagcaagactccc
agcaaatctgcaagcatttcgtcgtcagcaagcaatcacattgtagcgacgccccctgct
ggcccggcgtatgctgcagcggcagcagggcaaaccagtacagggagcggtagtcagttc
ccaatcccccctcccccctctggttcagcatatgctgccgcagctgccgccactcccccc
cacagtgccgcctctctcatctcagaaaacagtaaccactcgtcagtgccggcatggtcg
tctgtcacagcacaccacaatgagacgtcatcatcaggtacagcgcagcagcccaggcca
cccgtcacaccgccaacagccatctcgaaaccgcagcagagaataccagatgggcagcta
tcagaagcaacagcaaacagcttgaaccactcgcagggctccgtcccaagtagtgttgcg
cccacgccgcccgtcaactctgcgccaggtcccatcgtcagccaaacatccacccagatg
accattgctgctaacagtgttacctcaaccaaagaccttgcatcgcttgggctggccaac
atgtcgtcagcatcaacaacgtcgtccacgatgtccgcgccctcgacacccggcaagtcg
gaaccactcatgaacgggccgtcctcgctcaacgctgccgagtacaagttttcacagata
accaccaatttgctgttccttttcggacaggaccagcaatcgtcggaatctatgacatcg
ttgaaaagtatggcggagaaggccgtggtaaacgcagggttggaggaacacttacagaca
cagcagttcagtacggaggattcaggagctttcagtagcggtagtgcagtacccacaaca
ccaaccctatcagattctggcaggctagcaaagatctcatccctctttagcagtacaacg
acaacaacaacagactcacaggcccctgtccaacccccgcccaccacagaagcccacctg
cagcccatccttggggtggcgcccctgggtcccgtcccactcagtaaggacaatgtgtac
ggtctgggcatgctggaggcgtcctaccatcacatgccccacccgtcagactccgaaaaa
ctaagaaagtcaagaggattattggtctctgttgtttccagacaatacttgcctagaaat
ccgtgcccaacaccgccttactacccccagcacccgttgcctcactctgacagccttgag
ttcttcaccagactctccaccgagacgctcttctttattttctactacttagagggtacg
aaggctcagtacctagcagctaaggcattgaagaagcaatcgtggaggttccacaccaaa
tacatgatgtggttccagaggcatgaggagcccaaaacaatcactgatgagtacgaacag
ggcacgtacatctattttgactacgagaagtggggccaacggaagaaggagggtttcacc
ttcgagtaccggtacttggaggacagggacttgcaatga
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