Branchiostoma floridae (Florida lancelet): 118429269
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Entry
118429269 CDS
T01074
Name
(RefSeq) THO complex subunit 4-like
KO
K12881
THO complex subunit 4
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03015
mRNA surveillance pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118429269
09122 Translation
03013 Nucleocytoplasmic transport
118429269
03015 mRNA surveillance pathway
118429269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118429269
03041 Spliceosome [BR:
bfo03041
]
118429269
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118429269
TREX complex
118429269
Spliceosome [BR:
bfo03041
]
Complex C
Other components
EJC/TREX
118429269
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118429269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118429269
NCBI-ProteinID:
XP_035695638
UniProt:
A0A9J7M6Q5
LinkDB
All DBs
Position
13:12305954..12311022
Genome browser
AA seq
269 aa
AA seq
DB search
MTDKMDMSLDDIIKLNKPGRGGRGRGGGRGRGGGRGRGASRGRGGGGGGGFSAGGGGGGG
PMRRGRRGNPRSAPYSRPQSMPDVWQHDMFDGGVGGGGARRAPQLGGGGTGISTGGKLLI
SNLDFGVSDADIKELFAEFGNLKKAAVHYDRSGRSLGTADVVFEKRADAMRAMKQYNGVP
LDGRSMNIQLVTSNLAAAGGGGGGGGGVGGARQGGGSYGGGRGRGGRGRGGFGGRGRGRG
GGRGGKSRENISAEQLDAELDAYNAGMNS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgacggacaagatggacatgtctcttgacgatatcatcaagctcaacaagcccgggcgc
ggcgggagaggccggggaggcggccggggacggggaggtggccggggacgcggcgcaagt
cgaggccgtggcggcggcggtggaggtggcttcagtgccggtggtggcggcggcggtggt
cccatgaggaggggaagacggggcaaccctaggtcagctccgtactcgaggccccagtcc
atgccagatgtgtggcaacacgacatgtttgacggtggtgtcggaggagggggtgcacgg
agggcgccacagctagggggaggggggaccggcatctccacaggagggaagctcctcata
tctaacctggactttggggtctcagacgcagacatcaaggagctgtttgcagagtttggg
aacctgaagaaggcagcggtacactacgataggtcaggtcgcagcctggggacggcggat
gtcgtgtttgagaagagagcagacgccatgagagccatgaagcagtacaacggtgttcca
ctagatggacggtcaatgaacatccagttggtgacttcaaacctggccgcagcaggcggt
ggtggaggcggcggcggtggtgtcggtggcgccagacagggtggaggcagctacggagga
ggcagagggcgtggcggaaggggccgaggtgggttcgggggcaggggacgcggtaggggt
ggtggtcgtggaggcaagagcagagaaaacatctcagcagaacagctggacgctgagcta
gatgcatacaatgccgggatgaacagctag
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