Branchiostoma floridae (Florida lancelet): 118429281
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Entry
118429281 CDS
T01074
Name
(RefSeq) gem-associated protein 5-like
KO
K13133
gem associated protein 5
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118429281
03041 Spliceosome [BR:
bfo03041
]
118429281
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118429281
mRNA cycle factors
P-body specific factors
118429281
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
118429281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_GEMI5
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
GEMI5_RBS
WD40_Prp19
Beta-prop_EML_2
ANAPC4_WD40
WD40_WDHD1_1st
WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_RFWD3
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
118429281
NCBI-ProteinID:
XP_035695654
UniProt:
A0A9J7M8W6
LinkDB
All DBs
Position
13:289035..329232
Genome browser
AA seq
1305 aa
AA seq
DB search
MAMFRPKRTGSREQLSWHPTKEGTLAFGTDDGSVGLYDVLHTKHATMSSTSHKKTVYSLS
WGPAAAVSGVSTNLALYSCGGDGEIYQHSFNKTQQLAVCISDIIKTTNQIKHKLPPATEI
AWREDGQFVAIGNEDGSVEVMASHNLRRICIIRTHHRPINKLCWHPMLPDAPALYSYWLA
SASNQSDVHVHNLLAVIGADTQPAVPLVFSEPFRQAEGHKAKVVDLSWSPHRPGWLVSAS
YDNTAQVWDMTKDKAVSNYRGHQGRVLSVQWCPTDVDMVYSGGDDFSVQSWKISQQEHKE
PPIDHKPPGRKPKSKGKAKNRMTEPHKQVAQDLRQPELTRSQEQVGTGPSRDGALSQEDM
GGTMGTSLQSEDLLRLLEEKRAQLLRRQKAEDCTSGVPQLSLCEEDIASADSEGQEATGQ
LKSPTSQRSLMEDVMPVQRTRENAVPIVASAAEGRDPRVNRKKKKGRSLFPLSANMDNRA
KCHLQQDCLALTDLTYERAAGDLAAGSGDLAGLGLFFDRRSLYKTFKEESLNHLQNGHLD
HSLQLAIWRGDIVGALQMARQHGQLTDWLVAMAPLAGHDVWLQTVEDYSEQLCAQDQHYK
AVTFLLACHKVHEAIDLLKNNKMFREAVALAKVRLPPHDPAVLEVYDAWATELQKDHYEQ
AAKCYLAMQQPCDAAAVLARRGDLETLQVAAKIAAAAGSEDQLSLVACRYAHECQVQCKW
REGQDLLRNHKQLQVHRLNLCLHEVLVHGLYDIGCLSEGWAQAIVPYSWGELGSPVFLPE
FLQYTGESDPLCPWSPYLLQGQCFLGYVVQVWSQYCGLDLTTGNTPQLCQQLTATLTGGS
KPANAAKLLCMVSCQVTTGLLYLVGGDVHEAVTHFVAAVHLIHDRGQYYIMKGLLQMLLP
QGSFSLRQLDTLTGEKCFMAKVTVQGNCTSLQHILSCLSAFYHVATLYELWWSGPHQAVQ
MVDSGDGYLVSSATDQPQKCSTDGSYTMKAAASTPEENNTFPATDQMYSVFIQQLQAISA
AVLIPDVARRYALEERLAEMESTLHGAAANQRQSRLSKNTSTCNTVQTDGNYTCSTVQAD
GNNTCSTVQADGNNTCSTVQADGNNTCSTVQADGNNTCSTVQADGNNTCSTVQADGNNTC
STVQADGNNTCSTVQTDGNNTCSTVQADGNNTCSTVQTDGLQTGPSRKNNAEDEEWINRG
SLNGNSQMMAGLGVQQLETCQDVNQSTQLSHLKDQLSTIPQGYRILPFPEPVELAMTLVY
LCCHWPQNQDIMAAVGHAVISWGLTHSHKSSQHQYFTRWFNKMST
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgttccgacccaagagaacaggtagtagagaacagttgtcctggcatccaaca
aaggaaggcactctggcttttggcacagatgatggttcagtgggactgtacgatgtgctg
cacaccaaacatgccaccatgtccagtaccagtcacaagaagactgtgtactccctgtcc
tggggaccagctgctgcagtgtcaggagtcagcacaaacctggcactgtacagctgtgga
ggtgatggtgagatctaccaacactctttcaacaagactcagcaactagctgtctgtatc
tctgacatcattaaaactaccaatcaaatcaagcacaaactgcctcctgcgacagagatt
gcctggagggaggatggacagtttgtggccatcggtaatgaggatgggtcagttgaggtc
atggccagtcataatcttcgacgtatctgcatcattcggactcaccatcggccaatcaac
aagctgtgctggcatcccatgttgcctgatgccccagctctctacagctactggctggca
tctgcatccaaccaatcagatgtgcatgttcacaacctcctggctgtgattggagctgat
actcagccagctgtccctttggtcttttctgaaccatttcgtcaggctgaaggccacaag
gcaaaagtggtggatttgtcctggagtcctcatcggccaggctggctggtgtctgcctca
tacgataacacagctcaggtgtgggatatgactaaagacaaggctgtgtccaactatcga
ggccaccagggaagagtgttgtctgtacagtggtgccccactgatgtggacatggtgtac
agtggaggggacgacttctctgttcagtcatggaagatatctcaacaggaacataaagaa
ccacccattgatcacaaaccaccaggaagaaagcccaagtctaagggaaaggcaaagaac
aggatgacagagcctcataaacaagtagcacaggacctgaggcagccagagcttaccagg
agccaggagcaagttggtacaggccccagcagggatggtgctttatctcaggaggacatg
ggagggactatgggaaccagtcttcagtctgaggacctgctccgactcctggaggagaag
cgagcccagctgttgaggagacagaaggcagaagactgtacatcaggagtgcctcaactc
tcgctgtgtgaggaggacattgcctcagcagattctgaaggtcaggaggcaactggtcag
ctgaagagtccgactagtcagagatcactcatggaggatgtaatgccagtgcagaggacc
agggagaatgcagtacctattgtagcctcagcagcggaagggagagatccaagagttaat
agaaagaagaagaaggggcggtcactatttcctttatcagctaacatggacaaccgtgcc
aagtgtcaccttcaacaggactgcctggcactgacagatctgacctatgaaagagctgct
ggagacttagctgctggaagtggagatcttgctggccttgggcttttctttgacagaaga
agtctgtacaaaaccttcaaagaagaaagtcttaatcatttgcagaacggtcatctggat
catagtcttcagttagccatctggagaggtgacattgtgggagccctgcagatggccagg
caacatggccagctgactgactggttagtggccatggcacctctagctggccacgacgta
tggttgcagactgtggaggactattccgagcagctctgtgcccaagaccagcattataag
gctgtaaccttcctactggcctgtcacaaagtacatgaggctattgatttgctgaaaaac
aacaaaatgttcagagaggctgtggccctagccaaagtccgtctccctccccatgaccct
gcagtactggaggtgtatgatgcctgggcaactgagctgcagaaagatcactacgagcag
gcagcaaagtgctaccttgccatgcagcagccctgtgatgctgcagctgtcctggccaga
agaggggatctggaaaccctgcaggtcgctgcaaaaatagccgctgcagcaggaagtgaa
gatcagctgtctttggtggcatgtagatatgcacatgagtgtcaggtgcagtgtaaatgg
cgggaagggcaagatcttctcaggaaccacaaacagctacaggtccacagattgaatctg
tgcctccatgaagtgcttgttcatggtctgtatgacattggctgtttgtcagaaggctgg
gctcaagcaatagttccatacagctggggagaattgggcagtccagtttttctaccagag
tttcttcagtacaccggtgagtcggaccccttgtgtccttggtcaccttaccttctccag
ggccagtgtttcctgggctatgttgtacaagtgtggagtcagtactgtggacttgatctg
actacaggtaacactccccagctgtgtcagcagctcactgcaacactgacaggagggagc
aaacctgccaatgctgcaaagttactgtgcatggtgtcatgtcaggtgactacaggtctg
ttgtacctggtaggtggtgatgttcatgaagctgtgacacactttgtagctgcagtacac
ctaatacatgacagagggcagtactacattatgaaaggactactacagatgcttctcccc
caaggcagtttttccctcagacaactggacacgttgacaggggaaaaatgtttcatggca
aaagtcacggtgcagggcaactgtacaagtctacagcatattttaagttgtctgtcagca
ttttatcatgtggccacactgtatgaactgtggtggagtggacctcatcaagctgttcaa
atggtagacagtggagatggttacctggtctccagtgctacagaccaaccacagaaatgc
agtactgatggatcctacaccatgaaggctgctgcctcaacaccagaggagaacaacacg
tttcctgccacagaccagatgtactctgtgttcatccaacagctccaagcaatatcagct
gctgtcctcatacctgacgtagctcggaggtatgccctggaggagaggctggcagagatg
gaatctacccttcatggggcagctgcaaatcagagacaatcaagattgtcaaaaaataca
agcacctgcaatacagtacagacagacggtaactacacctgcagcacagtacaggcagat
ggtaacaacacctgcagcacagtacaggcagatggtaacaacacctgcagcacagtacag
gcagatggtaacaacacctgcagcacagtacaggcagatggtaacaacacctgcagcaca
gtacaggcagatggtaacaacacctgcagcacagtacaggcagatggtaacaacacctgc
agcacagtacaggcagatggtaacaacacctgcagcacagtacagacagatggtaacaac
acctgcagcacagtacaggcagatggtaacaacacctgcagcacagtacagacagatggt
ctgcaaacaggtcctagtcggaaaaacaatgctgaagatgaagagtggatcaacaggggg
agcctgaatgggaactcacagatgatggctggactgggtgtgcaacagttggaaacttgt
caggatgttaaccagagtacacaactgtcacaccttaaagaccagttgtctaccatacca
cagggctacaggatcctgccattccctgagcctgtagagttggccatgacactggtgtac
ctgtgctgtcactggcctcagaaccaggacatcatggcagcagtgggccatgctgtcatc
tcctggggactcacacattcccacaagtcttcccaacatcagtatttcaccagatggttc
aacaaaatgtccacatag
DBGET
integrated database retrieval system
