Branchiostoma floridae (Florida lancelet): 118429553
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Entry
118429553 CDS
T01074
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118429553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118429553
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118429553
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118429553
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118429553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_3
zf-CCCH_4
zf-CCHC_3
zf-CCHC_2
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
118429553
NCBI-ProteinID:
XP_035695971
UniProt:
A0A9J7NB40
LinkDB
All DBs
Position
13:complement(2229476..2235105)
Genome browser
AA seq
300 aa
AA seq
DB search
MEEVVASVGGIRFEMEIAIEEQRGSQPLPFPGMDKSGAAICDYFVRGSCVKGASCPFRHV
RGEKSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGACSNKECPFLHIDPESK
IKDCAWYDRGFCKHGPHCKNRHVRRTMCMNYMVGFCPEGPKCKYKHPKFDLPISDTATKK
TSIVCHHCGESGHKAIGCPSNPNAQPEAQNFTSPSHGPGYQFRPREERGPAGQYRPLESV
TCFKCGEKGHYANKCPKGHLAFLSTSLHPGQHGSPGHPPPTRPPGPPPPRPMGPPPQVPS
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtcgtagcgagtgtcggagggatcaggtttgagatggagatcgctatagag
gagcagagaggctcacagccgctacccttccccggaatggacaaatctggtgctgcaatt
tgtgactactttgtgcgggggagctgtgtgaagggtgcgagctgcccgttcagacatgtc
cgcggggagaagagtgtcgtgtgtaaacactggctgcgggggctgtgtaagaagggagac
cagtgtgagtttctacacgagtatgacatgaccaagatgcccgagtgttacttctattca
aaatttggagcttgtagtaataaggaatgtccgttcctacatattgatcctgagtctaag
attaaagactgtgcctggtatgacaggggcttctgtaaacatggtccacactgtaagaac
agacatgtcagaagaaccatgtgtatgaactacatggtaggcttctgtcccgaggggccc
aagtgcaagtacaagcatcccaagtttgatcttccaatatctgacactgcgacaaagaag
acgtctatagtttgccatcactgtggtgagagtgggcacaaagcaatcggctgtcccagt
aaccccaatgcacagcccgaagcacagaactttacgtctccctcccacggtcctggatac
cagttccgaccacgagaggagcgcggtcctgctggacagtacagaccgctggagtccgtc
acatgtttcaagtgtggagaaaaaggccactatgccaacaagtgtcccaagggccacctg
gcattcctcagcacctccttacaccccggtcagcacggctcacctggtcatcctccccca
acaagaccacctggacctccacccccaagacctatgggccctcctccacaagtaccatcc
tga
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