Branchiostoma floridae (Florida lancelet): 118430414
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Entry
118430414 CDS
T01074
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118430414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118430414
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
118430414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
118430414
NCBI-ProteinID:
XP_035697166
UniProt:
A0A9J7MA42
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All DBs
Position
14:10607236..10618764
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AA seq
698 aa
AA seq
DB search
MADEVSDEAEHVPTTPVGDVNSFVQRSLSSVLRATKSSRTALPSPGDDFDYYSSFAGFRE
FAATQAHRIVNNMNALLRHEGVEGEVLRGKKSVELDDRLDTVVEANDIILERVGSLLDQA
SGVVKQKEPVLPTGTPQTGTLVSSWNKKSRSKSGSEKSVTWRLLHARNIERPQLKFKDKI
DNSNTPFIPIIRHKPNAHRPLPKYDQQKRHPEDLDVPAALADFIHRQREVHQGQPADLTA
HPYQYELEHFQPTPQQLLKKQPQPSKPIDATPLTLVTTLEELMDMNDKLTMCSEFAVDLE
HHSYRSFQGFTCLMQVSTRDHDYIVDTLALRADLHVLNDTFTDPKVVKVFHGADMDIQWL
QRDFGVYVVNMFDTGQASHVLGLPRHSLAYLLKTYCDVEPDKKYQLADWRIRPLPSEMTQ
YAREDTHYLLHIYDCMRSELLDRGNNEANLLHNTLERSRQVCLQRYQKLLYTEDSYLNLL
NKHKKTFNSQQLHAVRLVYRWRDTIARQEDESTGYVLPNHMLLVLAETLPKQIQGVFACC
NPVPPLVRQHIEDVHRLLVQARDVPLVKTESTSVVRRPDRKVHDDRMTDLYCPHDLSKLT
SHPDSQDTPPTAPAAVKKNPSMFGEEGGKERDILQHPLSCIKAHPDITLFDTVANAQKGT
TSCKGKLSANQEKVARIMASFTSPFEKVFTSILCIHCV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaagtttcagacgaagctgaacacgtgccgacgactccagttggggacgta
aatagcttcgtccagcgttccctgagcagcgtgctccgtgcgaccaagtcctcgcggacg
gccctgcccagccccggggatgactttgattattactccagctttgctggctttagggag
tttgcagccacacaggcacacaggattgtcaacaatatgaacgcactgttacgccacgag
ggggtggaaggcgaagtcctgcgtgggaagaaatccgttgagctggacgaccgattggac
acggtggtggaggcaaacgatatcattctggagagagttgggagtctcctggaccaggca
tcaggagtagtcaaacaaaaggagccggtcctgcctactggcacaccacagacagggact
ctggtgtcatcatggaacaagaaatccaggtccaagagtggcagtgaaaagagcgtgacg
tggcgacttctgcacgccaggaacatcgagcgtccgcagctcaagtttaaggacaaaatt
gacaacagcaacacgccgttcatccccatcatacgccacaaacccaacgctcaccgcccg
ctcccaaaatatgaccagcagaagcgccacccggaggatctggatgtccctgcagctctg
gctgacttcatccacagacagagggaggtccatcagggccagcctgcagacctgaccgca
cacccctaccagtacgagttagagcacttccagcccacacctcagcagttactgaaaaaa
cagccacagccttctaagcccattgatgccacacccctgactctggtcaccacacttgaa
gaattgatggacatgaatgacaagttaaccatgtgttctgagtttgctgtggacttagag
caccactcctacaggtcgttccagggtttcacctgtctgatgcaggtgtccacccgcgac
catgactacatcgtggacaccctggcactgcgcgctgacctgcacgtcctcaacgacacc
ttcacagatcccaaggttgtcaaggtgttccatggagcagacatggatatccagtggtta
cagcgagactttggcgtgtacgtggtgaacatgttcgacacgggccaggcgtcccacgtc
ctcggcctgcccagacactcgctggcatatctcctaaagacgtactgtgatgtggaaccc
gacaagaagtaccagctcgcagactggaggatcagacccctccccagtgagatgacccag
tacgcccgtgaggacacccactatctcctgcacatctatgactgtatgagatcagaactg
ttggacagggggaacaatgaggctaacctcttacacaacacgctggagagaagcagacaa
gtgtgtctacagcggtaccagaagttgctatacactgaggattcctacctgaacctgctt
aacaaacacaagaaaaccttcaactcacaacagctccatgcagtgagacttgtgtatcgg
tggagagacaccatagccagacaagaggatgaaagcacagggtatgttttacccaaccac
atgttgttagtgttagcagagacgttacccaagcagatacagggtgtgtttgcctgctgt
aaccctgtccccccactggtgaggcaacacatcgaggacgtccacagactcctggtacag
gccagggatgtgccactagtcaagacagagagcacttctgtagtgagaagaccagacagg
aaggtccatgatgacaggatgactgacctgtactgtcctcatgatctgtccaaacttaca
tcacatcctgacagccaggatacaccacccacagcaccagctgcagttaagaagaatcca
tccatgtttggtgaggagggaggaaaggaaagggacatattgcaacatcctctatcctgt
atcaaggcacatcctgatatcacattgtttgatacagtagcaaatgcacagaaagggact
accagttgtaagggaaaactttcagcaaatcaggaaaaggttgcaagaataatggcttct
tttacaagtccttttgaaaaggtatttaccagtattctttgcatacattgtgtatga
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