KEGG   Branchiostoma floridae (Florida lancelet): 118430506
Entry
118430506         CDS       T01074                                 
Name
(RefSeq) DNA ligase 3-like isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Pathway
bfo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    118430506
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bfo03400]
    118430506
Enzymes [BR:bfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     118430506
DNA repair and recombination proteins [BR:bfo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     118430506
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C zf-CCHH RNA_ligase BRCT_2 mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 118430506
NCBI-ProteinID: XP_035697304
UniProt: A0A9J7MAH2
LinkDB
Position
14:6103501..6116133
AA seq 998 aa
MLVRLLWSPSVSTKAARTLNLQKSLHHSPVLRRAASFVSSKACNYLWKHWRSSPVCIPAA
FCNTRILNPWSSTIHTGVSIMSEQRFCVEYAKQGRAGCKKCKQKIEKGLPRIGKIVPNFF
HEGDGEMKQWYHVACIFETFQRARATTKKIEDASDLEGWEDMEDEEKQTILKLIKELESK
AKSPKKKVVQATLSTKGKIQSPTKKAASSATVSDDSPAAGPSSSSSASTSVSMTSPTPTP
DIDHKDNAFREFRRLCALIAEEPGYNAKTKLVSDFLKKGSNGDGFKGDTFLVVKLLLPGV
VKRVYNLNNKQLLKHFANIFGVNLADMLTDLELGDVSETVRKFFEESERCLPAKKSKLTI
QEVDESLEILAQMTKEDDQMRELNKIAKKCTANDLKVVVRLIKHDLRINAGAKHILEGLD
PNAYPAFQASRNLADVVERVVANGCAPGMKKSLSIKANLMTPVLPMLAEACKSVEMAMRK
CPNGMYAEIKYDGERVQVHKQGNKFEYFSRSLKPVLPHKVAHFKDYIPKAFPHGSNMILD
SEVLLVDTNTGNPLPFGTLGIHKKQQFSDAQVALFVFDCIYFNGETLMDRPISERRKFLE
DNMTVIPNRVVLSEYRYITEPGDLSDMIGRVIRDGLEGLVLKDTKSIYEPGKRHWLKVKK
DYLEQGAMADTADLVVLGAFYGTGNKGGLKSVFLMGVYDPDSDKWCTVTKCGNGHDDNTI
AKLNKELDMVKISKDVSKVPKWLKITKNLVPDFVCADPKKAPVWEITGAEFSKSEAHTAD
GISIRFPRVTKIRDDKDWKSATNLKQLKHLFKTSKETSDIPDLLKGKGKSPRKPIKVKVE
DDDDDDDDSNGGASSNGATPIKGMKRKAEEESPRTPKKSKPTCRYGAACYQTGKEHLDKF
DHPTRKSPKKTNSAAKSVLPDVFCGIKLFLPDTVDNYALLRRYFVAYDGDIVQDYAMSQA
THVVEDPDQKNMNGKTDAQLVTVDWLWQCIKRKQLVPV
NT seq 2997 nt   +upstreamnt  +downstreamnt
atgctagtccgacttctatggtctccaagcgttagtactaaggctgcgagaaccctcaac
ctccagaaatcattacatcacagccccgtattgagaagagcagcatcttttgtcagtagc
aaggcctgtaactacctctggaaacattggcgcagcagtccagtgtgtatcccagctgcc
ttctgtaacacacggatactgaacccctggagtagcaccatccatacaggagttagcatc
atgtcggaacagaggttctgtgtcgagtacgccaaacagggcagggccggctgcaagaag
tgcaagcagaagatcgagaagggtctcccccgcatcggcaagatcgttcccaacttcttc
cacgagggagacggggagatgaagcagtggtatcacgtcgcctgcatcttcgagacgttc
cagagggcgcgcgccaccaccaagaagatcgaggatgcctcagacttggagggctgggaa
gacatggaggatgaggagaaacaaaccattctcaagctcatcaaagagttggagagcaag
gcaaagtctcctaagaagaaggttgtccaggcgacactgtctactaaaggaaaaattcag
tctcccaccaagaaggctgctagcagtgccactgtctcagatgattccccagcagcaggc
ccatcatcatcatcatcagccagtacctcggtgtcgatgacctcccccacccccacccct
gacatagaccacaaggacaacgcgttccgagagttccgccggctgtgtgcgctcatcgcc
gaggaaccgggctacaacgccaagactaaactggtgtcagacttcctgaagaaaggatcc
aatggagatggatttaagggcgacactttcctggtggtgaagcttctccttcccggggta
gtgaagagagtgtacaacctgaacaacaagcagctgctcaagcacttcgctaacatcttt
ggggtcaacctggcagacatgttgactgaccttgagctaggcgacgtgtcggagactgtg
cggaagttttttgaggagagcgaacgttgcctgccggccaagaagagcaaactgaccatc
caggaagtggacgagagtctggagatcctcgctcagatgaccaaggaggacgaccagatg
agggagctcaacaagattgcaaagaaatgcacagccaatgatctaaaggtggttgttcgt
ctgatcaaacacgatctccgaatcaacgcgggagccaagcacatcctggagggactggac
cccaacgcctacccagcattccaagcttcccgtaacctagcggacgtggtagagagggtc
gttgccaacggttgcgcgcccgggatgaaaaagtcgctcagcatcaaggctaacctgatg
acaccagtgctgccaatgctggctgaggcatgtaagtccgtggagatggccatgagaaag
tgtcctaacgggatgtacgcagagataaagtacgacggggagagggtgcaggtccacaag
cagggcaacaagttcgagtacttcagccgcagtctcaaacctgtgctgcctcacaaggtt
gcccactttaaggactacatcccgaaggcgttcccccacggcagtaacatgatactggac
agcgaggtcctattggtcgacacaaacacgggcaacccgctgccctttggaaccctggga
atccacaagaagcagcagttcagcgacgcacaagtcgccctgttcgtgttcgactgtatc
tacttcaatggggaaacccttatggacaggccaatttctgaaaggagaaaattcctggag
gacaacatgacagtgatccccaacagggtggtgttgtcggagtacagatacatcacagag
cctggcgacctgtcggacatgatcggccgggtgatccgcgacgggctcgagggtctcgtg
ctgaaggacaccaagagcatctacgagcccggcaaacgacattggctcaaggtcaaaaag
gactacctagagcagggcgccatggcggacacggcagacttggtggtgctgggcgcattc
tacggaacggggaacaagggtgggctcaagtcggttttcctgatgggggtgtacgatccg
gactccgacaagtggtgcacggtgaccaaatgtgggaacggacacgacgacaacacgatc
gcaaagctcaacaaagaacttgacatggtcaagatcagtaaagacgtgtccaaagtgccg
aagtggctcaagatcacaaagaacctggtaccggacttcgtgtgcgccgacccgaagaaa
gcgccggtttgggagatcacgggagcggagtttagcaagtcagaggcgcacacggctgac
gggatatccatccgcttcccacgggtcaccaagattcgcgatgacaaggactggaagtcg
gccacgaatctaaagcaacttaagcatcttttcaagacatccaaggagacctctgacatc
cccgacctcctgaaggggaagggcaagtcaccacggaaacctatcaaggtcaaagtggag
gatgatgatgatgatgatgatgacagcaatggtggtgcctccagcaatggggccacaccg
atcaagggcatgaaaagaaaggctgaagaagaaagtcccagaacaccgaaaaagtccaag
cccacatgtaggtacggcgcagcctgctaccagactggcaaggaacacctggacaagttt
gaccatcccaccaggaagtcgccaaaaaagacgaacagcgctgctaagagtgtccttcct
gatgttttctgtggcatcaaactgttcctgcctgacacagtggacaactatgccctgctc
aggaggtactttgtcgcgtacgatggtgacattgtgcaagactacgccatgtcacaggcc
acacatgtggtagaagatcccgaccaaaagaacatgaatggtaagacggatgcccagctt
gtgacagtagactggttgtggcagtgcatcaagaggaaacagcttgttccagtgtga

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