Branchiostoma floridae (Florida lancelet): 118431422
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Entry
118431422 CDS
T01074
Name
(RefSeq) DNA excision repair protein ERCC-8-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03420
Nucleotide excision repair
bfo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118431422
09124 Replication and repair
03420 Nucleotide excision repair
118431422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bfo04121
]
118431422
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118431422
Ubiquitin system [BR:
bfo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
118431422
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
118431422
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR90_beta-prop_4th
WD_LRWD1
WD40_RFWD3
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_LRRK2
Beta-prop_Nup120_160
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
118431422
NCBI-ProteinID:
XP_035698536
UniProt:
A0A9J7ND20
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Position
15:9050226..9061272
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AA seq
400 aa
AA seq
DB search
MLNFLSCRENGTLDPLALVRAETTRRTFSLELSKEQDVKRIHASGANSLDLDPAESRYLL
SGGADGVIAVYDTHNLSGTPSSTAEAVCTVGRSHRHVHKYSVETVRWYPHDTGLFTSSSM
DKTLKVWDTNALLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTH
ILKGHRAAVKCARWSPRNPYLLATGSQDNKVLLWDVRSAKSSLMSLDQHNGELATSTAAV
NTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYGKICNDSKKSVQFTVS
RGSSPDVVFVPDDSSIAMFDVFGGTSLHRLVGHYNYVQCCVFNPDTQELYSGGSDSNILV
WVPDLGRGEDYEESKKQKAEPSQRSQNLQAYQDTWSSDED
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacttcctgagttgtcgggagaatggcacactcgacccgctggcgctggttcgc
gccgagacgacccgccgaaccttcagcctggagctgagcaaagaacaggacgtgaagagg
atccacgcgagcggcgccaactcactggacctggacccggccgagtccagatatctgtta
tccggaggtgcagatggagtgattgctgtttatgacacccacaacctgtcaggcacaccc
agcagtactgctgaggctgtctgtacagtaggaaggtcccaccgccatgtgcacaagtac
agtgtggagacagtccgctggtacccacacgacaccgggctgtttacatccagctccatg
gacaagacactgaaggtgtgggacaccaatgccctgctgcctgccgaggtcttccagttc
gagggcacggtgtactcacacgccatgtctcctgtagccaagaaacactgcctcatcgca
gttgctaccatgacctccattgtgaccctatgtgatctgaagtctgggtcatccacacac
atactgaagggtcaccgagcagcggtgaagtgtgcccgctggtctcccaggaacccgtac
ctgctggccacgggcagccaggacaacaaggtactgctgtgggacgtgcggagtgccaag
agcagcctcatgtcactggaccagcacaatggggagctggcaaccagcactgcggcagtg
aacactgcccataacggccatgtgaacggtttgtgcttcacacctgaggggctccacctc
ctgagctttggcactgaccaccggctcagactgtgggacacggctactggcaggaacaca
ctggtgaactacgggaaaatctgcaatgatagtaagaagtctgttcagttcacggtctcg
cgtggctcgtcccctgacgtggtgttcgttccggacgacagttccatcgcgatgtttgac
gtgttcggcgggaccagtctacaccggttggtggggcactacaactacgtgcaatgctgt
gtcttcaaccctgatactcaggagctgtacagtggggggagtgacagtaacatcctggtg
tgggtgccagatctgggcaggggggaggattatgaagagtccaaaaaacagaaagcagag
ccaagccagagaagccagaatctccaggcatatcaggacacatggagcagtgatgaggat
tga
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