Branchiostoma floridae (Florida lancelet): 118432715
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Entry
118432715 CDS
T01074
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118432715
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118432715
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118432715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
PSP94
Motif
Other DBs
NCBI-GeneID:
118432715
NCBI-ProteinID:
XP_035700220
UniProt:
A0A9J7NDD7
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All DBs
Position
16:7411499..7454725
Genome browser
AA seq
1482 aa
AA seq
DB search
MYSFGCRYFLPVLLLVLRTHAQFDGDDLTAFKLTCEDENKVTHFNNDIWKKDRCTTCVCD
RGNIICSEIVCDEQIRDPNCKSWETPLTECCPICTDGDIVKFGQPGRGSKGEPGNALVDG
EGYAGLQGPPGPPGPPGELGPSGLPGSRGPPGARGPPGSPGNPGTPGTPGPPGPPGPGGA
GANALAAMQGADQKAGGAALGMQGPMGPMGPRGSPGPPGLPGPPGFGGPPGEPGDSGPPG
PTGPRGPQGPPGKSGEDGSSGRDGKAGPIGPPGPQGPRGFPGTPGIPGLKGHRGFPGLDG
AKGEGGAPGEKGEAGTPGAAGSPGPMGPRGMSGERGRPGPTGPPGPAGADGQSGSSGPPG
PTGPTGPPGFPGRAGSKGEAGAGGARGPPGAQGERGEPGSPGPSGIAGLQGPAGIDGIPG
AKGSAGAAGPQGPPGFPGPRGPPGNAGSPGSVGAKGPPGAPGLPGFKGDAGPKGANGEPG
EIGAPGPAGEDGKRGPRGEGGPPGPPGPNGERGGPGPRGFPGADGAAGPKGAPGARGPPG
GEGQKGAAGEPGRPGEQGLPGPTGLTGRPGADGKTGSTGPNGPPGEDGRPGPPGPQGARG
LPGVMGFPGPKGANGEGGKDGKDGEPGSQGPRGEPGKDGEVGPSGPPGPVGEAGERGEPG
PTGPPGFQGMPGPGGPPGEAGKNGDPGTPGEAGPPGQSGPRGERGFPGERGSVGPAGAPG
PRGPNGPAGSDGAAGAPGEKGPPGGVGPPGLQGMPGAQGSPGVGGAKGDRGDSGGRGPEG
APGKEGARGPPGPVGPMGPSGANGDKGDPGAAGPIGATGSRGAPGERGQPGPAGPAGFPG
PPGNDGAPGEKGEQGDSGPKGDGGAPGAQGAAGPVGPPGPAGVPGRKGARGEKGPDGAVG
FPGAPGRVGPPGPTGPSGNAGTPGNPGKDGEKGIRGEPGQAGRPGDSGPPGPPGPEGSKG
DVGSDGPSGPPGPPGPQGLAGSRGIVGLPGTRGERGFPGPPGAAGEPGKPGNAGPSGDRG
NPGPPGPQGMMGPPGEAGPEGPTGNTGPPGLPGAQGEKGNRGNPGPNGPAGIPGPLGPPG
PAGSAGKQGDRGDTGPPGPSGPTGAMGPRGPAGPSGAPGAKGESGEAGERGPKGHRGFAG
LQGLPGPPGQPGDQGATGPAGPAGQRGSPGGRGPAGPPGNDGKSGPAGMMGPRGRPGEAG
PAGMPGPPGPPGPPGPAGDPGGFPASAFMGQRAKGPDPLAGYYRDAPGDGKGADPKVADA
LEAISAQIESLKKPTGTRKNPARTCRDLALCHPTWPSGNYWIDPNQGCTVDAIEVWCDMK
TYETCVYPKPAKVPRGAWYKGPSKHVWFGDSMKGGYHFTYTADEIQMQFLRLSSTGARQN
ITYQCKNSVAYYDAYNSNYKKALKIMGNDETELSAEGARKFQYDVNLKEDGCQSAAPGKW
SQTVMEYKTKKTTRLPFIDIAPYDIGRPDQEFGVEIGPVCFK
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgtatagctttggttgtagatattttttgccggttttattactagtgctgagaacgcac
gcccaattcgacggagatgacctaacggccttcaaattaacatgtgaggacgagaacaaa
gtcacgcatttcaacaacgacatctggaaaaaggataggtgcacaacatgcgtctgcgat
agagggaatatcatctgcagtgagatagtgtgtgatgaacagatacgggaccccaactgt
aagtcatgggagacccccctgactgagtgctgccccatctgcacagacggtgacatagtg
aaattcggtcaaccaggaagaggtagcaagggagagcctggtaacgcactggtcgacggc
gagggatacgctggcttgcaaggcccacccggaccccctggacccccgggcgaacttgga
ccctccggtctccccggttcccgcggaccccccggagcccggggaccacctggatcacct
ggcaaccctggtacacctggaacacctggaccccctggaccccccggacccggtggtgct
ggcgcaaacgccctggctgccatgcaaggcgctgaccagaaggctggcggagctgctctc
ggaatgcagggacccatgggcccaatgggtccccgtggatctcccggaccccctggactt
cccggaccccctggctttggtggaccccctggcgagcctggtgactctggcccccctggt
ccgactggcccacgtggtcctcagggacctcccggcaagtctggtgaagacggttcctct
ggaagagacggcaaggctggtcccatcggcccacccggacctcagggtccccgtggtttc
cctggcacacctggtatccctggactgaagggacacaggggtttccctggtctggatggt
gctaagggcgagggtggtgctcctggtgagaagggtgaggccggtactcccggtgcagct
ggatctccaggacccatgggtccccgcggtatgtctggagagcgtggccgacccggtccc
actggtccccccggacccgctggtgctgatggacaatctggctcaagcggtcctcccggc
ccaactggacctactggaccacctggtttccccggacgtgccggatctaagggagaggct
ggtgccggcggtgctcgcggtccccccggtgcccagggagagcgtggtgagcccggctca
cctggtccctctggtatcgctggtctgcagggccctgctggtatcgacggtatccccggt
gctaagggatctgctggtgctgctggtccacaaggacctcccggcttccccggaccccgt
ggcccacccggtaacgctggtagccccggctccgtcggtgccaagggaccacctggtgcc
cctggtctgcccggattcaagggagatgctggccccaagggagctaacggtgagcccgga
gagatcggcgcacctggacctgctggtgaggacggtaagaggggaccccgtggtgagggc
ggcccacctggaccacctggacccaacggagagaggggaggccccggcccacgtggtttc
ccaggcgctgacggtgcagctggacctaagggtgcacccggagcaagaggaccccccggc
ggcgaaggacagaagggtgctgccggagagcctggtaggcccggagaacagggtctccct
ggtcctacgggtctgactggacgtcctggagctgacggcaagactggatcaactggcccc
aacggacctcccggtgaggacggtcgtcccggaccccctggcccccagggtgctcgtggt
ctccccggagtcatgggcttccccggacccaagggcgccaacggagagggtggcaaagac
ggcaaggacggagagcctggttctcagggaccaaggggagagcccggtaaggacggagag
gtcggcccctctggaccccccggacccgtcggcgaggcaggcgagcgtggagagcccgga
ccaactggacctcctggattccaaggaatgcccggccctggcggaccccccggtgaggct
ggtaagaacggagaccctggcacccccggagaggccggaccacccggtcaatctggccca
cgcggagagagaggcttcccaggagagcgtggatccgtcggccctgctggggctcccggc
ccacgtggtcccaacggtcccgctggtagtgacggtgctgcgggtgctcctggtgagaag
ggacctcccggcggagtcggaccccccggtcttcagggtatgcctggtgctcaaggatct
cctggtgttggtggcgctaagggtgaccgtggtgactctggtggacgtggtcctgagggt
gctcccggaaaggaaggtgcacgtggtcctcccggccctgtaggccccatgggtccctca
ggtgctaacggcgacaagggtgatcccggcgcagctggtcccatcggtgcaactggttct
cgtggtgctccaggcgagcgtggacagcccggccccgccggacccgctggcttccccggc
ccacctggtaacgacggcgcccctggtgagaagggtgagcaaggagattctggacccaag
ggtgacggtggtgctcctggagcccagggtgccgctggacccgtcggacctcccggacct
gctggtgtgcctggcaggaagggtgctcgtggtgagaagggaccggacggtgccgttggc
ttccccggtgcccctggccgtgtcggaccccccggcccaactggaccttccggtaacgct
ggtacccctggcaaccctggcaaggatggagagaagggtatccgtggagagcctggtcag
gctggccgccctggtgattctggtcctcctggcccacctggtcccgagggatccaagggt
gacgtcggttctgatggtccatccggtccacctggacctcccggtccccagggtcttgct
ggatcaaggggtatcgtgggtctacccggaactcgtggtgagcgtggtttccctggcccc
cctggtgctgctggcgagcccggcaagcctggtaacgctggaccttctggtgaccgcggc
aaccccggacctcccggcccgcagggcatgatgggtccacctggcgaggctggtcctgag
ggtcccacaggaaacactggtccacctggattgcctggcgctcagggagagaagggtaac
cgaggtaaccccggtcccaacggtcccgctggaatccccggccctctcggcccacctggc
cccgctggatccgcaggcaagcagggagatcgcggtgatactggtccccccggtccatct
ggtcctactggtgctatgggtccccgtggtccagctggtccttctggtgcacctggtgct
aagggtgagtctggagaggcaggagagcgtggtcccaagggacaccgcggattcgctggt
ctgcaaggtcttcccggtccccccggtcagcccggtgaccaaggtgcaactggtcccgcc
ggtcccgctggacagagaggttctcctggaggtcgtggtcccgctggtccacctggtaac
gatggtaagagcggtcccgctggtatgatgggtccacgtggtcgtcccggtgaagctggt
cccgctggtatgcccggcccccctggtcctcccggtccccccggacccgcaggcgatccc
ggtggcttccccgcctccgcattcatgggccaacgtgccaagggcccagatccactcgcc
ggctattacagagatgcccctggcgacggcaagggtgccgaccccaaggttgccgacgct
ctggaggccatcagcgcacagatcgagtcactcaagaagcccactggcaccaggaagaac
ccagccaggacttgccgcgatcttgctctctgccacccaacatggccatctggtaactac
tggatcgatcctaaccagggatgcaccgttgatgctatcgaggtatggtgcgacatgaag
acatacgagacctgtgtctaccccaagccagccaaggtaccaaggggagcatggtacaag
ggcccgagcaagcacgtctggttcggcgacagcatgaagggcggctaccacttcacctac
accgccgacgagatccagatgcagttcctgaggttgtccagcaccggcgctcgccagaac
atcacctaccagtgcaagaactctgtagcgtactacgatgcctacaacagcaactacaag
aaggccctcaagatcatgggcaacgacgagaccgagttgtcggccgagggagccaggaaa
ttccaatacgatgtaaacctaaaggaagatggatgccagagtgccgcaccaggaaaatgg
tcgcagacagtcatggaatacaaaacaaagaagacgacgcggctgccgtttatcgacatt
gcaccttacgacatcggcagaccagaccaagaattcggcgtggaaattggcccggtctgc
ttcaagtag
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