Brevundimonas fontaquae: JX001_05980
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Entry
JX001_05980 CDS
T09174
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bfq
Brevundimonas fontaquae
Pathway
bfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JX001_05980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfq03019
]
JX001_05980
Enzymes [BR:
bfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JX001_05980
Messenger RNA biogenesis [BR:
bfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JX001_05980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QSF55802
LinkDB
All DBs
Position
complement(1227912..1229387)
Genome browser
AA seq
491 aa
AA seq
DB search
MGLNKALLQALASTGYTKPTPIQEKAIPDVMAGKDLLGIAQTGTGKTAAFALPILHRLAE
NRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGGQERALQQGL
DILIAAPGRLLDHIQQKNLDLSSTEIFVLDEADQMLDLGFIKPIRQIVSKIPAKRQNLFF
SATMPSEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVYIEQGRKRALLTEMFSDPEYT
RCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLAAFKAGKLRVLVATDIAA
RGIDVDGVSHVVNFELPHVPESYVHRIGRTARAGKDGTAVSFVAGDEMKLLRDIEKVTRQ
KIPAIDRRNDKALGQLDATIMATGVGKKATMPEREGGERNEGGQGRGGRGRRAPHREGVR
PEGGGQPHRQRRNRPGETPAAPRPERAYNPLAGERVPSINDNVKPAEGEMKRRPRRRPSN
GGKGYGGAAKG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaacaaggccctgctgcaggccctggcctcgaccggctacaccaagccgacc
ccgatccaggaaaaggccattcccgacgtcatggccggcaaggacctgctgggcatcgcc
cagaccggcacgggcaagacggccgccttcgccctgccgatcctgcatcgtttggccgaa
aaccgcatcgcccccaagccgcgcacgacgcgcgtgctggtcctgagccccacgcgtgaa
ctggcgacccagatcggcgacagcttcaaggcctatggcgcgcacctgggcttccgggtc
gcggtgatcttcggcggcgtgaaatacggcggtcaggagcgggccctgcaacagggtctg
gacatcctgatcgccgcgcccggccgcctgctggaccacatccagcagaagaacctggac
ctgtcctcgaccgagatcttcgtcctggacgaggccgaccagatgctggacctgggcttc
atcaagccgatccgccagatcgtctccaagatcccggccaagcgccagaacctattcttc
tcggcgaccatgccgtccgagatcggcaagctggcgggcgaactgctgaaggacccggtc
aaggtccaggtcacgccacagtcgaccacggtgcagcgtatcagccagtcggtcgtctat
atcgaacagggccgcaaacgcgccctgctgaccgagatgttctcggatcccgagtacacg
cgctgcctggtcttcaccaagaccaaacacggcgccgacaaggtcgcggcctatctggaa
gccggcggcgtcgaggccggggccatccacggcaacaagagccagccccagcgtgaacgc
accctggccgccttcaaggccggcaagctgcgcgtcctggtcgccaccgacatcgccgcg
cgcggcatcgacgtggacggcgtctcgcacgtcgtgaacttcgaactgccgcacgtgccg
gaaagctacgtccaccgcatcggccgcaccgcgcgggcgggcaaggacggcaccgccgtc
agcttcgtcgccggcgacgagatgaagctgctgcgcgacatcgagaaggtcacgcgccag
aagatcccggccatcgaccgtcgtaacgacaaggccctgggccagctggacgccaccatc
atggccaccggcgtcggcaagaaggcgacgatgccggaacgcgagggcggcgagcgcaac
gagggcggccagggacggggcggtcgcggccgtcgcgcgccgcaccgcgagggcgtgcgt
ccggaaggcggcggccagccgcaccgccagcgtcgcaaccgcccgggcgaaaccccggcg
gccccgcgtcccgagcgcgcctacaaccccctggccggcgagcgtgtgccctcgatcaac
gacaacgtcaaaccggccgagggcgaaatgaagcgccgcccccgtcgccgcccgtcgaac
ggcggcaagggctacggcggcgccgccaagggctga
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