Brevundimonas fontaquae: JX001_09160
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Entry
JX001_09160 CDS
T09174
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfq
Brevundimonas fontaquae
Pathway
bfq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JX001_09160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfq03400
]
JX001_09160
Enzymes [BR:
bfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JX001_09160
DNA repair and recombination proteins [BR:
bfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JX001_09160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
MFD_D3
SecA_DEAD
AAA_30
UB2H
Cas3-like_C_2
RecG_dom3_C
Helicase_RecD
ATPase_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QSF53002
LinkDB
All DBs
Position
1866943..1870248
Genome browser
AA seq
1101 aa
AA seq
DB search
MKSSPADTDLSATGQQVLVDGPAPQADDGKRWKMPAAAVAAGLAEITTKRSQAVVFIATS
ERRADEIAAALSPMVKDAEVLVLPPWDCLPYDRAAPSRESMGRRMAVLAALNEASARPVF
LVASPDAIVQRTPSRGRIKARLSLAAGEALDREVLESFLTDTGYAADERVDEPGEYALLG
AVVDVFPPAAATPYRIVLDEADRITEIHAFDPVSQRRGAAIEMICLTPAAEWSDRSAEDD
DPDHQDTGPSIDAETSKTLFDFLDKPMILTDVGVEDRFERIRAHVAEAYDTRLRFSEGAR
PPKPDSLYLTEKDVRQALKGAKPLSVEGWAPTPAFALEKSPGRALKQFIAERREAGDRIV
LTGLPHEHRIILRLLRRHDIDAPTVLENWSAIEPLQPGQIAIVIADLDTGFRQSAAGLVV
LTPSDIFGGRIARGSGDTNDAFGETELRLDDVVIHEDHGLGVLKALERVAADGVERDVLR
IEYHGGGTILAPIEEFGKIWRYGSEPDAVSLDRLNTQGWVKRRAKVSAQIDEAAAALSAR
AEARAALRTEPIAAPRQALARFAAGFAFPETADQARAIEAVLSDLGSGKPMNRLVCGDVG
FGKTEVALRAAAAVALAGKQVIVVAPTTVLARQHFEVFKRRFKDTDIQVGHLSRAADSAE
ARAVKAGLADGSMRVVVGTQALASEGLAFSDLGLVIIDEEHRFGAQMKSALAAKAPHLLS
MSATPIPRTLQSAMVGIQDVSLIASPPARRRPIRTFMTPFDAGAVRLSLMREKARGGQSF
VVVPRIEDMEPLAERLKTLTPELSVVSAHGDMSPSAIDEVMSRFSDGEGDVLLATNIIET
GLDVPRANTMLIWRPDRFGLAQLHQLRGRVGRGRRQGFTYLLSDPEAPMAAATEARLQTL
EALDRLGAGFAISGRDLDLRGGGDLVGEEQAGHVRLIGSALYQAVLARALAAAKGDFDPD
QASPSLNVGATGHLPADYIPDETVRINLYARLARATTAEDVDALRDEAEDRFGPLPDPAE
DLFTARRLAALARDAGVTEIVSGPKATALRIAAARRPGMEAAFPLSDDRRWSEDRMIVDA
ANDQPHDTAFIEKLLTELAAA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgtctcccgccgacacagatctttccgccacaggccagcaggtcctggtcgat
ggtccagccccccaggcggacgacggcaagcgttggaaaatgccggcggcggccgtggcg
gccggacttgctgagataacgaccaagcgctcgcaggccgtagtgttcatcgcgaccagc
gaacgtcgcgccgatgagattgcggcggccctctcgccgatggtgaaggacgccgaggtg
ctggtcttgccgccttgggactgcctgccttacgaccgcgccgcgccttcgcgcgagagc
atggggcggcggatggccgtcttggccgccctgaacgaagccagcgcaaggcccgtgttc
ctggtcgcctcgcccgatgcgatcgtgcagcggacgccgtcgcgcggacggatcaaggct
cgcttgtcgctcgcggcgggcgaggcgctggatcgcgaagtcctggagtcgtttctgaca
gatacgggctatgcggcggatgagcgggtcgacgaacctggcgagtacgctctgctcggc
gcggtagtcgacgtcttcccgcccgcggctgcaacgccttatcgcatcgtcctggatgag
gcggaccggatcactgagatccacgccttcgatcccgtatcgcaacgccggggcgccgcg
attgagatgatctgtttgaccccggccgcagagtggagcgaccgatcggccgaggatgac
gatcccgatcatcaggatacggggccgtcgatcgatgctgagacctccaagaccctgttt
gacttcctcgacaagcctatgatcctgaccgacgtgggcgtcgaggatcggttcgaacgc
attcgcgcgcatgtggccgaagcctatgacacgcgcctgcggttcagcgagggcgcgcgt
cctccgaaacccgacagcctctatttgacggaaaaggacgttcggcaggcgttgaaaggc
gccaaacccctgagcgtcgagggttgggcgccgacgccggccttcgcactggagaagtcg
ccggggcgggccctgaaacagttcattgcggagcggcgcgaggcgggcgatcgcatcgtt
ctgacaggattgcctcatgagcacaggatcatcctacgcctgctgcgtcgccacgatatc
gatgcgcccacggtgctcgagaactggagcgcgatcgagcctctgcagcccgggcagatc
gccatcgtaatcgccgatctggacacaggcttccgacagtcggccgccggtcttgtcgtc
ctgacgccttcggacatattcggcggccggatcgcgcgaggatccggcgacacgaacgat
gcgttcggagagaccgaactgcggttggacgatgtggtcatccatgaagaccacggtctg
ggtgtgctgaaggcgttggagcgggtcgctgccgatggtgttgagcgtgacgttctgcgc
atcgagtatcatggcggtgggaccattctcgcgccgatcgaggagttcggcaaaatctgg
cgctacggctcggagccagacgcggtgtcgctggatcggctgaatactcagggatgggtg
aagcgtcgcgccaaggtcagcgcgcagatcgatgaggccgcggcggccctgtccgcccgg
gccgaggcgcgcgcagcgctgaggaccgagccgatcgccgcaccgcgtcaggcgctggcc
cggttcgccgccggcttcgccttccccgaaacggccgatcaggcgcgcgccatcgaggcg
gtcctgtcggacctgggatccggcaagcccatgaaccggctcgtctgcggcgatgtcggt
ttcggaaagaccgaggtcgctctgcgcgccgcagcagccgtggcacttgccggcaaacag
gtcatcgtcgtcgccccgaccaccgtcctggcgcgtcagcatttcgaggtgttcaagaga
cgtttcaaggacacggacattcaggttggccacctgtcgcgcgccgcagacagtgcggag
gcgcgggcggtcaaggcagggctcgcggacggctccatgcgcgtcgtggtgggtacgcag
gccctggcgtccgaagggttggcgttttccgaccttgggcttgtcatcatcgatgaggaa
caccgcttcggcgcgcagatgaaatctgccttggcagcgaaggcgccgcatctgttgtcg
atgtcggccaccccgatcccgcggactcttcaaagcgccatggtcggcattcaggacgtc
agcctgatcgccagtccccctgcgcgacgtcgacccatccgaaccttcatgaccccgttt
gacgccggggcggttcgcctgtcgctgatgcgcgagaaggcgcggggcgggcagagtttc
gtggtcgtgccgcgtatcgaggacatggaacccttggcggaacgcttgaagaccctgacg
ccagagctgtccgtggtctcggcgcacggcgacatgtccccgtccgcgatcgacgaggtc
atgagccgcttctccgacggcgagggggacgtgcttctggccacgaacatcatcgagacc
ggcctggatgtaccgcgcgccaatacgatgttgatctggcggccggaccgcttcggcctg
gcgcagttgcatcagctgcgcgggcgtgtcggccgggggcggcgccagggcttcacctat
ctgctttccgatcccgaagcgccgatggcggcggcgacggaggcccgcctgcagaccttg
gaggctttggaccgactgggggcgggcttcgcgatcagcgggcgcgatctggacctgcgc
ggcggcggcgatctggtgggcgaggaacaggccggacatgtcaggctgatcggctcggcc
ctttatcaggccgtcctggctcgagcgctcgcggctgcaaaaggcgatttcgatcctgac
caggcctctcccagtctgaacgtcggcgcgacagggcatttgccggcggactacatcccc
gacgaaaccgtgcgcatcaatctgtatgcccgattggcacgcgccacgacggcggaagat
gtcgacgccttgcgagacgaagccgaagatcggttcggccctttacccgacccggcagag
gatctgttcaccgcgcgtcgcctcgcggcgctcgcgcgtgatgccggcgtcacggaaatc
gtatcgggaccgaaggcgacggcgttgcgaatcgcggcggcgcgtcggcccggcatggaa
gccgccttcccgttgagcgatgatcgacgctggtcggaggatcgcatgatcgtcgacgcc
gccaacgatcaaccgcacgacacggccttcatcgagaagcttctgaccgaattggcggcg
gcctga
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integrated database retrieval system
