Brevundimonas fontaquae: JX001_09730
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Entry
JX001_09730 CDS
T09174
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bfq
Brevundimonas fontaquae
Pathway
bfq03030
DNA replication
bfq03430
Mismatch repair
bfq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JX001_09730 (dnaE)
03430 Mismatch repair
JX001_09730 (dnaE)
03440 Homologous recombination
JX001_09730 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfq03032
]
JX001_09730 (dnaE)
03400 DNA repair and recombination proteins [BR:
bfq03400
]
JX001_09730 (dnaE)
Enzymes [BR:
bfq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JX001_09730 (dnaE)
DNA replication proteins [BR:
bfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JX001_09730 (dnaE)
DNA repair and recombination proteins [BR:
bfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JX001_09730 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
QSF53102
LinkDB
All DBs
Position
1988856..1992320
Genome browser
AA seq
1154 aa
AA seq
DB search
MNEPVNSQGFVHLRVRSAYSLLEGAIKAAKVGKLAADAGMPAVGVADRANLFGALEFSQT
AKDAGVQPLVACALPVFGIGGQINARWAKVPTVVLLAQDTAGWLNLCALSSSAYLDAGEM
AEPGVAWEQVVARSEGLILLSGGPDGPVDPLFAQGKKAEGAAALAAMKAAFGDRFYVELQ
RHGLEDEKRAEPGLVEWAYANDVPLVATNDVYYAKAAQAKSHDALLCIADGAFTGQEDRR
RITGEHWFKPAAVMRELFADLPEACDNTIDIARRCAFLVNTHAPILPRFDTGAGRSEADE
LAHQAREGLKVRLTEVTPAVPEEEYWTRLEWEVGIIQQMGFPGYFLIVSDFIKWAKTHGI
PVGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVID
YVQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPAAPVTLAQA
IDIEPRLKEARDAEPAVKTLLETALELEGLYRNASTHAAGIVIGDRPLTELVPLYQDPRS
TIPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGAAEDWNSLPLDDARTYEL
MASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYIDRKFGRAEV
DYLHPSLKEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKKEEMDFQRLR
FVKGAAEKAVPESQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKANQPVEFFAAS
MSLDLSNTDKLAVFYQDAKRFDVPVLAPDINRSSADFDVAWDDDKGAVLYALGAIRNVGL
EAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNRRQLLEQAD
VLMAYCQSVAAERASSQVSLFGGDQAHAARPRLKSVEPWVGPERLDHELSAVGFYLSGHP
LDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTGEKFAFVTFSDPT
GEFECLFPPEQLRKCREVLEPGASVMVRVRAKSSEGEVRFFGDDASQMDNLLDDANIGLR
IHVSARSADAEALKARLERARSGAIGKGGEVSLMIAGLDQGREVEVKIPGRYRLDGALRG
ALKSAAGVVMLEDA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgagccggtgaacagtcagggttttgtccatctgcgggtccgctcggcctattcg
ctgctggaaggcgcgatcaaggcggccaaggtcggcaagcttgcggccgacgccggaatg
ccggcggtcggggtggcggaccgggccaatctgttcggcgcgctggagttcagccagacg
gcgaaggatgcaggcgttcagccgctcgtcgcctgtgctcttccggttttcggcatcggc
ggccagatcaacgcgcgctgggccaaggtgccgaccgtggttctgctggcccaggataca
gccggatggctgaatctgtgcgccctgtcgtcatccgcctatctggacgccggagaaatg
gccgagccgggcgtggcctgggagcaggtggtcgcccgctccgaagggttgatcctgctg
tccggtggcccggacggcccggtcgatccgctgttcgcccaaggcaagaaggccgaaggc
gccgccgctctggcggcgatgaaggcggcgttcggcgaccgcttctacgtcgaactgcaa
cgccacgggctggaggacgaaaagcgcgccgagccggggctggtcgaatgggcctatgcc
aacgacgtgccgctggtcgccaccaacgacgtctattacgccaaggcggcgcaggccaaa
tcccacgacgccctgctgtgcatcgccgacggcgccttcaccgggcaggaggatcgccgc
cgcatcaccggcgaacactggttcaagcccgccgccgtcatgcgcgagctgttcgccgac
ctgcccgaggcgtgcgacaacaccatcgacatcgcgcggcgctgcgccttcctggtcaat
acgcacgcgcccatcctgccgcgcttcgataccggcgccgggcgctccgaggccgatgaa
ctggcccaccaggcgcgcgaggggctgaaggtccgcctgaccgaggtcacgccggccgtg
cccgaagaggaatactggacccgcctggaatgggaggtcgggatcatccagcagatgggc
ttccccggctacttcctcatcgtgtcggacttcatcaaatgggccaagacccacggcatt
cccgtggggccggggcggggctccggcgccggttcgctggtcgcctggtcattgaccatt
accgatctggacccgctgcggtttggcctgctgttcgaacggttcctgaaccccgaacgg
gtctccatgcccgacttcgacatcgacttctgccaggagcggcgcgaagaggtgatcgac
tatgtgcaggaccgctacggcaaggaccgggtggcccagatcatcaccttcggcaccttg
caggcgcgggccgtgctgcgcgacgtgggccgggtgctgcagatgccgttgggtcaggtc
gaccggctctgcaagatggtgccgaacaacccggccgcgcccgtcaccctggcccaggcc
atcgacatcgagccgcgcctgaaggaggcgcgcgacgcggagccggcggtgaagaccctg
ctggaaaccgcgctggagctggaggggctataccgcaacgcctcgacccacgccgcgggg
atcgtcatcggcgaccggccgctgacggaactggtgccgctgtatcaggatccgcgctcc
accattccggcgtcccagttcaacatgaaatgggtcgagccggctggcctggtgaagttc
gacttcctgggcctgaagacgctgacggtgctggatcgggcgcgcggctatctcgaacgg
cgcggcgcagccgaggactggaacagcctgccgctggacgatgcgcgcacctatgaactg
atggcctctggccagacggtcggggtgttccagctggaatcccagggcatgcgagacacc
ctgcgcaagatgcgctgcggctccatcgaagagatcaccgccctgatttcgctctatcgg
cccgggccgatggagatgatcgacacctatatcgaccgtaagttcgggcgcgccgaggtc
gattacctgcaccccagcctgaaagaggtgctgaccgagacctacggcgtcatcatctac
caggaacaggtgatgaagatcgcccagatcctggcgggctacagcctgggcgaggccgac
ctgctgcgccgggcgatgggcaagaagaagaaggaggagatggatttccagcgccttcgc
ttcgtcaagggcgccgccgaaaaggccgtgccggaatcgcagtccggctccatcttcgat
ctggtcgccaagttcgccggatacggcttcaacaagtcccacgccgccgcctatgccctg
atttcgttccagacggggtggttgaaggccaatcagccggtcgagttcttcgcggcgtcc
atgagcctggacttgtcgaacaccgacaagctggcggtcttctatcaggacgccaaacgg
ttcgacgtgccggtcctggcgcccgacatcaatcgctcgtcggccgacttcgacgtggcc
tgggacgacgacaagggcgcggtgctctacgccttgggcgcgatccgaaacgtgggtctc
gaggcgatgaaacacgtcatcgaggtccgcgagacgggcgggcgcttcgccgacatcttc
gacttcctcgagcgcgtcgatccgcgcagcgtgaacaagcgcgcgttggaaggtctggcc
aaggccggcgccttcgacagcatccaccccaaccggcggcagttgctggaacaggccgac
gttctgatggcctattgccagagtgtggcggccgaacgcgcgtcgtcgcaggtgtcattg
ttcggcggcgaccaggcccatgccgcgcgcccgcgtctgaagagcgtcgagccctgggtc
gggccggagcggctggatcacgaactgtcggcggtcggcttctatctgtcgggccacccg
ctggacgagatgacctcagccctgaagcgcaagcgcgtcaccttcgtcgccgaagcgatt
ccgctggctgagtcgggccacgaggcgttccagatggccggcgtcgtgcgtcgcaaacag
gagcgggccagcgcgcggacgggcgagaagttcgccttcgtgaccttctcggatccgacg
ggcgagttcgaatgcctgttcccgcccgaacaactgcgcaaatgccgcgaggtgctggag
cccggcgcctcggtcatggtgcgggtgcgcgccaagtcgtcggaaggggaggtgcgcttc
ttcggcgacgacgcctcgcaaatggacaatctgctggacgacgccaacatcggccttcgt
atccatgtctcggcccgcagcgcggacgctgaggcgctgaaggcgcggctggaacgcgcg
cgatcgggcgcgatcggcaaggggggcgaggtgtcgctgatgatcgcgggcctcgatcag
gggcgcgaggtcgaggtcaagattcccggccgctaccgcctggacggcgccttgcgcggc
gcgctgaagtcggcggcgggcgtcgtcatgctggaggacgcctga
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