Brevundimonas fontaquae: JX001_12000
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Entry
JX001_12000 CDS
T09174
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfq
Brevundimonas fontaquae
Pathway
bfq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JX001_12000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfq03021
]
JX001_12000 (rpoC)
03400 DNA repair and recombination proteins [BR:
bfq03400
]
JX001_12000 (rpoC)
Enzymes [BR:
bfq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JX001_12000 (rpoC)
Transcription machinery [BR:
bfq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JX001_12000 (rpoC)
DNA repair and recombination proteins [BR:
bfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JX001_12000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QSF53506
LinkDB
All DBs
Position
complement(2455785..2459981)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEFGDDGFTA
EIGAEAVRNLLMGIDLNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMI
LTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDGEPGEGKLFANIGEIDAALD
AKVVTLHTRIKARWTEQDAEGNEVTKVIDTTPGRMKLAALLPRNPNVGYRLLEKNLTKKE
IGNLIDVVYRHCGQKATVIFADQMMGLGFREAAKAGISFGKDDIVIPAKKVELVAETRTQ
VEEYEQQYADGLITRGEKYNKVVDAWSKATDRIADAMMGEIAQPRVLIEGENPDINSVFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEQDCGSTRGITLRAVMEGGDVLVSLGQRILGRYA
AEDIKEPGTDTVLFPADTYLVEEVAEAVEAAGVQSVKVRSALTCEAEAGICAHCYGRDLA
RGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFMEATNAGTAKVTGPTV
VAAHGDLVAMSRNVIVTVVVDGKDRETHKAPYGARIRVKDGDEVKKNQRLAEWDPYTTPI
LTEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGSDLRPAMGVTLGDAYAK
LSSGSDARYLLPVGAVLSVSNGDEVKPGEIIARVPTEGAKTRDITGGLPRVAELFEARRP
KDCAVIAEMDGRVEFGRDYKNKRRIKITPEPNADGVQGEPVEFLIPKGKHISVHDGDLIQ
KGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVE
VLDSGETTLIRGDTVEVAEAVLENAKVEKRGGRLATTQPVLLGITKASLQTRSFISAASF
QETTRVLTDASVHGKKDMLEGLKENVIVGRLIPAGTGAYLRSLQKIANERDAELTSALEE
AIEPLPADLQLELESSES
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaacccggtcccggtcaccccgaccttcgaccag
atcaagatcgccctggcctcgcccgagaagatccgttcgtggtcgttcggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgcgcg
cgtatctttggcccgaccaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaagtcaccctggctcgcgttcgccgc
gagcgcatgggtcacatcgacctggctgcgccggtcgcccacatctggttcctgaagtcg
ctgcccagccgcatctcgctgatgctggacatggcgctgaaggacgtcgagcgcgtcctg
tacttcgagaactacatcgtcaccgagccgggcctgaccccgctgaagcagaaccaactg
ctgacggaagacgagttctatcgctaccaggaagagttcggcgatgacggcttcaccgcc
gagatcggcgccgaggccgtccgcaacctgctgatgggcatcgacctgaacgcggaagcc
gaaaagcaccgcgccgagctggccgacaatccctcggaaatgaaggccaagaaggcgtcc
aagcgcctgaagcttatcgaggccttcctggaatcgggcaacaagcccgagtggatgatc
ctgacgatcgtgccggtcatcccgccggaactgcgtccgctggtgcctctggacggcggt
cgtttcgcgacctccgacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctgatggaactgcgcgcgccggacatcatcatccgtaacgaaaagcggatg
ctgcaggagtccgtcgacgccctgttcgacaacggccgtcgcggtcgcgtgatcacgggc
gccaacaagcgtccgctgaagtcgctggccgatatgctgaagggcaagcagggtcgcttc
cgtcagaacctgctgggcaagcgcgtcgactattcgggtcgttcggtcatcaccgtgggt
ccggaactgaagctgcacgagtgcggcctgcccaagaagatggcgctggagctgttcaag
ccgttcatctatgcgcgcctggacgccaagggcctgtcggggaccgtcaagcaatccaag
cgcatggtcgagcgcgagcagcccgccgtctgggacatcctggacgaggtcatccgcgag
cacccggttctgctgaaccgcgcgccgacgcttcaccgtctgggcatccaggcgttcgaa
cccaagctgatcgagggcaaggccatccgcctgcacccgctggtctgcaccgccttcaac
gccgacttcgacggcgaccagatggccgttcacgtcccgctgagcctcgaggcccagctg
gaagcgcgcgttctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccg
atcatcgtgccgtcgcaggacatcgtcctgggcctgtactatctgtcgctggtcaaggac
ggcgagccgggtgaaggcaagctgttcgccaacatcggcgagatcgacgcggcgctggac
gccaaggtcgtcaccctgcacacgcgcatcaaggcgcgttggacggaacaggacgccgaa
ggcaatgaggtgaccaaggtcatcgacaccacgccgggccggatgaagctggcggctctg
ctgccgcgtaacccgaacgtcggctaccgcctgctcgagaagaacctgaccaagaaggaa
atcggcaatctgatcgacgtggtctatcgccactgcggtcagaaggcgacggtcatcttc
gctgaccagatgatgggcctgggcttccgcgaagccgccaaggccggcatttcgttcggc
aaggacgacatcgtgatcccggccaaaaaggtcgagctggtcgccgagacccgcacccag
gtcgaggagtacgaacaacagtacgccgacggcctgatcacgcgcggcgagaagtacaac
aaggtggtcgacgcctggtccaaggccacggaccggatcgccgacgccatgatgggcgag
atcgcgcaaccgcgcgtgctgatcgagggtgaaaaccccgacatcaactcggtcttcatg
atggccaactccggcgcccgtggttcgcaggcccagatgaagcaactgggcggcatgcgc
ggcctgatggccaagccgtccggcgagatcatcgagacgccgatcacctcgaacttcaag
gaaggcctgaccgtccttgaatacttcaactccacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgccaactcgggttacctgacccgtcgtctggtggacgtggcg
caggactccatcgtcaccgagcaggattgcggctcgacgcgcggcatcaccctgcgtgcg
gtgatggaaggtggcgacgtgctggtctcgctgggtcagcgcatcctgggtcgttatgcg
gctgaggacatcaaggagccgggcaccgataccgtcctgttccccgccgacacctatctg
gtggaagaagtcgccgaggccgtcgaggctgcgggcgtccagtcggtcaaggtccgttcg
gccctgacctgcgaggccgaagccggcatctgcgcccactgctacggccgtgatctggcg
cgcggcaccaacgtcaacatcggcgaagcggtcggcgtcatcgccgcccagtcgatcggc
gagccgggcacccagctgacgatgcggaccttccacatcggcggtacggctcaggtggcg
gaaacctccttcatggaggcgaccaacgccggtacggccaaggtcaccggcccgaccgtc
gtcgcggcgcacggcgatctggtggccatgagccgcaacgtcatcgtgaccgtggtcgtc
gacggcaaggaccgcgagacgcacaaggctccttacggcgcccgcatccgcgtcaaggac
ggtgacgaggtcaagaagaaccagcgcctggcggagtgggacccctacaccaccccgatc
ctgacggaagtcggcggcgtcgtgcgcttcgaagacctggtcgaaggcctgtcggtcaag
gaagaaaccgacgaagcgacgggcatcgcccagcgcgtcgtcagcgactggcgcgccagc
ccgcgcggttcggacctgcgtccggccatgggcgtcaccctgggcgacgcctacgccaag
ctgtcgtccggttcggacgcccgttacctgctgcccgtgggcgcggttctgtccgtgtcg
aacggcgacgaggtcaagccgggcgagatcatcgctcgcgttccgaccgaaggcgccaag
acccgcgacatcaccggcggtctgccgcgcgtcgccgaactgttcgaagctcgccgtccg
aaggactgcgcggtcatcgccgagatggacggtcgcgtcgaattcggccgcgactacaag
aacaagcgccgcatcaagatcacgcccgagcccaacgccgacggcgtgcagggcgaaccg
gtcgagttcctgatcccgaagggcaagcacatctccgtccacgacggcgatctgatccag
aagggcgactacatcatcgacggcaacccggatccgcacgatctgctgcgcatccagggc
gtcgaggcgctggccgagtatctggtgaacgaagtgcaggaggtctatcgactgcagggc
gtgccgatcaacgacaagcacatcgaagtcatcgtgcgtcagatgctgcagaaggtggaa
gtgctggattcgggtgaaaccaccctgatccgcggcgacaccgtagaagtagctgaagcc
gttctggaaaacgccaaggtcgagaagcgtggcggccgtctggccaccacccagcccgtc
ctgctgggcatcaccaaggcgtcgctgcaaacccgcagcttcatctcggcggcgtccttc
caggagaccacccgcgtcctcaccgacgcctcggtccacggcaagaaggacatgctggaa
ggcctgaaggaaaacgtcatcgtcggccgcttgatcccggccggcaccggcgcctacctg
cgcagcctgcagaagatcgccaacgagcgtgatgcagaactgacctcggccctggaagag
gcgatcgagccgctgccggccgatctgcaactggagctggagagcagcgaaagctga
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integrated database retrieval system
