Bacteroides fragilis YCH46: BF0712
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Entry
BF0712 CDS
T00202
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03030
DNA replication
bfr03430
Mismatch repair
bfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF0712
03430 Mismatch repair
BF0712
03440 Homologous recombination
BF0712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfr03032
]
BF0712
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF0712
Enzymes [BR:
bfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BF0712
DNA replication proteins [BR:
bfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BF0712
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BF0712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
BAD47459
UniProt:
Q64YG7
LinkDB
All DBs
Position
834942..838826
Genome browser
AA seq
1294 aa
AA seq
DB search
MTYVDNFLKFIFVSSCRHCNFMASNYQPITMQDFVHLHVHTQYSLLDGQASVSALVDKAM
KDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPKGEIKDLKKRIAAIEAGEVECADKDAEI
ADCKAKIADAEGRLFKPIIGCEMYVARRTMDKKEGKPDQSGYHLIVLAKNEKGYHNLIKL
VSRAWTKGYYMRPRTDRNELEKYHEGLIICSACLGGEVPKKITQGLLAEAEEAIQWYKNL
FGDDYYLEMQRHKATVPKANHEAYPLQVNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAE
AHDRLICLSTGKDLDDPNRMYYTKQEWMKTKAEMNELFADVPEALSNTLEILDKVEYYSI
DHAPIMPTFAIPEDFGTEEGYRQKYTEKDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYD
KLYRIKLEADYLKKLTFDGAKKFYGDPLSPEVKERLVFELHIMKTMGFPGYFLIVQDFIA
AGRNMGVSIGPGRGSAAGSAVAYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDD
GRGEVLRWVTEKYGQEKVAHIITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPD
KKLNLKNAIEYVPELQAAEASPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDW
VPVSTADDKETGEKMLVTQYEGSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELD
IDSISIEDPATYKLYSDGRTIGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDY
IPDFIDRKHGRKPIEYDIPVMEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAM
GKKLRDKLDHMKPKFVEGGRKNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTA
YLKANYPAEYMAAVMSRSLSNITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIR
FGLGAVKGVGEAAVQSIMEERKENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFP
ELKREQYFAVNSKGETFLETLMRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWN
DLERLNKERELVGIYLSAHPLDEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVR
RGISKNGNPYGIAKIEDYSGSAEIPFFGNDWVTFQGYLGEGTFLFIKARCQPKQWRPDEL
DVKITSMELLPDVKEQLIEKITILIPLAELNSALVTELASLTKEHPGNTELYFKVTDTEG
KMYVDLISRPVKLSVGRELISYLKERPELAFHIN
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgacttatgttgataactttttgaagtttatctttgttagtagctgtagacattgtaat
tttatggcttcaaattatcaacctataactatgcaggatttcgttcatttacacgtccat
acgcaatattctcttctggatggtcaggccagtgtcagtgcattggtcgataaggctatg
aaagacgggatgaaaggtattgccgttacggaccatggaaacatgttcgccattaaagag
tttacgaactatgttaataagaaaaatggaggtccgaaaggagaaataaaggacctgaag
aagcggattgcagctattgaagccggtgaagtggagtgtgcggataaagatgccgagatt
gctgactgtaaagctaaaatagcggatgcggaagggcgattgttcaagcctatcataggc
tgtgagatgtatgtggctcgccgtacaatggataaaaaggagggaaagcctgaccagagc
gggtatcacctgattgtgctcgccaaaaacgagaaggggtatcataacctgataaaattg
gtttcgcgggcatggaccaaaggttactatatgcgtccccgtacagaccggaacgagttg
gagaaatatcacgaaggtttgattatctgttctgcgtgcttgggcggtgaagtgcccaaa
aagataactcagggattgttggcggaagcagaagaagccatccaatggtataagaacctg
tttggagacgattattatctggaaatgcagcgccataaagcgacagtgcctaaagcaaat
catgaagcttatccgttgcaggtgaatgtaaataagcatttgattgaatactccaaaaag
tataatgtcaagttaatctgtacgaatgatgttcactttgtcaacgaagaacatgctgag
gcgcacgatcggctgatctgtttgagtacgggaaaagatctcgacgatccgaaccggatg
tattatacgaaacaagagtggatgaagacgaaggcagagatgaatgaactctttgccgat
gtgcccgaagcattgagtaatacacttgagattctggataaagtagagtattattcaatc
gatcacgcaccgattatgcctacttttgcaatccccgaggactttggaacagaagaagga
tatcggcaaaaatatacggaaaaggatctttttgatgagttcacccaagacgaaaacggc
aacgtggtgttgagtgaggaagcagccaaagataaaataaaacgtttgggaggctatgat
aaactgtaccgtatcaaactggaagccgactatctgaaaaagctgactttcgacggagct
aagaagttttatggtgatccgttgtcaccggaggtcaaagagcggctggtctttgaatta
catattatgaagaccatgggtttcccgggatactttcttatagtacaagattttattgcc
gccgggcgtaatatgggagtctccattggtccgggacgtggttccgctgccggttctgcc
gtagcctattgtttgcagatcactaaaatagacccgatcaaatacgatttgctgtttgag
cgtttcttgaatcccgatcgtatttcattgcctgatatcgatattgacttcgatgatgat
ggtcgtggcgaagtgttacgttgggtgacggagaaatatggacaggaaaaggtggcgcat
atcattacctatggtactatggctacgaaactggctatcaaagatgttgcccgtgtccag
aaacttccgcttgccgaatcggatcgcttggccaaattggttccggataaaattccggat
aagaaactgaatctgaagaatgccatagaatatgtgcccgaattgcaggcggctgaagca
tctcccgatcctttggtgagggatacgatgaaatatgccaagatgcttgaggggaatgtg
cgtggaacgggtgtacatgcctgtggcactattatttgtcgtgatgatatcacggattgg
gtaccggtcagcacggctgatgataaagagaccggcgaaaagatgctggttacccaatat
gaaggttcggtgatcgaagataccggattgatcaagatggactttctggggctgaaaaca
ttgtctattataaaggaggctgtcgaaaatattcgtttgagtaaaggaatggaactggat
atcgattccatttcaatcgaggatccggctacttataaactttacagtgacggacgaacg
atcggtactttccagtttgagtctgccggtatgcagaagtacctgcgtgagttgcaacct
tctacgtttgaggatctgattgcgatgaatgccctttaccgtccgggtccgatggattat
attcctgactttattgatcgtaaacatggacgtaagcctattgaatatgatattcctgtc
atggagaaatacctgaaggatacatacggtattacggtctatcaggagcaggtcatgctt
ttgtcacgtctgctggccgattttacgcgtggtgaatcggatgccctccgtaaagcgatg
ggtaaaaaattgcgtgataagttggatcacatgaaacccaagtttgtagaaggcggaagg
aaaaacggacacgacccgaaagttcttgaaaagatttgggcggactgggaaaaatttgca
tcgtatgcgttcaataaatcacatgccacctgttattcttgggttgcctatcagactgct
tatctgaaagccaattatccggctgaatatatggctgctgtcatgagccgaagtttgtcg
aatatcactgatattaccaaactgatggacgagtgcaaaatgatgggagtacagacgttg
ggaccggatgtgaatgaaagtaacctgaagtttaccgtaaaccggaatggaaatatacgt
ttcggattgggagccgtcaaaggtgtgggtgaggctgccgtgcaaagcattatggaggag
cgaaaagagaacggtccctttaaaggtatcttcgactttgtgcagcgtgtcaacctgaat
gcttgtaacaagaaaaatatggaatgcctggcacttgccggtggattcgatagctttcct
gaactgaagcgtgaacagtattttgctgtgaacagcaaaggagagacttttcttgagaca
ttgatgcgttatggcaaccgttaccaagctgataaggctgccgccgttaattctttgttc
ggcggagataacgttatcgatatagcgactcccgaaattctaccggcggaacgttggaac
gatttggagagactgaataaggaacgcgaactggtaggtatttatttgtcggcacatccg
cttgatgaatatgccattgtgttggaacatgtttgcaatacacatatgagcgagcttgat
gataaatcggctttggcaggaagagagattacgatgggaggcattgttaccagtgtccgt
cggggtatcagtaagaatggaaatccttatggtatagctaaaatagaagattattccggt
tcggcagagattcctttctttggaaatgactgggttactttccaaggctatttaggtgaa
ggtactttcttgtttatcaaagcccgttgtcaacctaaacaatggcgtcccgatgaactt
gatgtcaagattacttcgatggaattgctgcccgatgtcaaggaacaactgatagagaag
attacgattctgattccgcttgccgaacttaattcggctttggtaaccgagcttgcttct
ttaacgaaagaacacccgggaaatacggaactttatttcaaagtaacggatacggagggg
aagatgtatgtagacctgatttcccgtcctgtgaaactttcggttggcagagaattaatt
tcctatttaaaggaacgtcccgaacttgcgtttcatataaattga
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integrated database retrieval system
