Bacteroides fragilis YCH46: BF2711
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Entry
BF2711 CDS
T00202
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bfr
Bacteroides fragilis YCH46
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfr03016
]
BF2711
Enzymes [BR:
bfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BF2711
Transfer RNA biogenesis [BR:
bfr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BF2711
Prokaryotic type
tRNA splicing ligases
BF2711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAD49461
UniProt:
Q64SR8
LinkDB
All DBs
Position
complement(3112583..3113980)
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AA seq
465 aa
AA seq
DB search
MGIRLKDLSKLGYRDNVARSLAVALVGKYCKHETKEQILAALGDILKNPEVYKNSEIWSK
LAEHLSPVFIEKRLTPYDLLDEPLGYKTYGSKYIETLAKQQMNLAMRLPITLAGALMPDA
HAGYGLPIGGVLATDHAVIPYAVGVDIGCRMNLTLFDAGEDFLKRYSHHIKEALKEFTHF
GMDGGLSFAQEHEVLDREEFRMTELLRGLHGKAVRQLGSSGGGNHFVEFGKMSLQAGNVL
GVPEGNYVALLSHSGSRGLGAAIAKHYSLLARDLCRLPREAQHFAWLGLDTEEGQEYWLS
MNLAGDYARACHERIHLNLSKALGLKPLANVNNHHNFAWKEEIAPGQTAIVHRKGATPAQ
KGQPGLIPGSMATPGYLVCGKGISEALCSVSHGAGRAMSRQNAKDNFTRSALRKYLSQAG
VTLIGGSVEEMPLAYKDIDRVMKTQEELVEVQGTFMPCIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgtttaaaagatttaagtaaactgggatatagagataatgtagctcgtagt
ctggctgttgctctcgttggcaaatattgtaaacacgaaacaaaagagcagatattagcc
gccttgggcgatattctcaagaatcccgaggtatataaaaacagtgagatatggagtaaa
ctggccgaacatctttctcctgtatttatcgaaaaaagattgacgccgtatgatttactt
gatgagcccttgggttataaaacatatggaagcaagtacattgaaacattagccaaacag
cagatgaatctcgccatgcggctgccgattactcttgccggagcattgatgcccgatgca
catgccggttacgggttaccgatagggggagtattggctacagatcatgcggttatcccg
tatgctgtgggggttgatatcggttgtcggatgaatctcaccctgtttgatgccggggag
gattttctgaaacgctattcgcaccatattaaagaagcgctgaaggagtttactcatttt
ggcatggatggcggattgtcttttgcacaagagcatgaggtgcttgacagagaagagttc
cgaatgaccgaattgttgagaggacttcatggcaaggcggtacggcaattaggtagctcc
ggtggtggaaatcattttgtggaatttggtaagatgagcttacaggccggtaatgtcttg
ggcgttccggaaggaaactacgtggctttgctgtcccattccggttcgcgtggtttgggt
gctgccattgccaaacactatagtctgctggcacgcgacctctgccgcctgcctcgcgag
gctcagcactttgcctggctggggttggatacggaagaaggacaggaatactggcttagt
atgaatttagcgggtgattatgctcgtgcctgccatgagcggattcatctgaatttgtca
aaagctttggggctgaaacctttggccaatgtgaacaatcaccacaattttgcatggaaa
gaggaaatcgctcccggacagacagccattgtgcatcgtaaaggagcaacacctgcacag
aaaggccaaccgggactgatccccggaagtatggcaacgcccggttatttggtatgtggt
aaagggataagtgaagccctttgttctgtctcgcatggagcgggacgagctatgtcccgc
caaaatgcaaaagacaactttacccggtcggcattgagaaagtatctttctcaggccgga
gtcacgctgattggtggcagtgtcgaagaaatgccgttggcttacaaggatattgaccgg
gtgatgaaaacccaggaggaactggttgaagtccaaggtaccttcatgccctgcatcgta
cgaatgaataaagaatag
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