Bacteroides fragilis YCH46: BF3127
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Entry
BF3127 CDS
T00202
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BF3127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF3127
Enzymes [BR:
bfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF3127
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BF3127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAD49872
UniProt:
Q64RK9
LinkDB
All DBs
Position
complement(3538367..3541744)
Genome browser
AA seq
1125 aa
AA seq
DB search
MTITELQHQYAGHPNVEALNKLLGEPAVRHIYCGGLYASAASLFASALVEKSPCPFVFIL
GDLEEAGYFYHDLTQVLGTERILFFPSSFRRSVKYGQKDAANEILRTEVLSRLQKGEEGL
CIVTYPDALAEKVVSRQELSENTLKLHVGERVDTGFITDVLHSYGFEYVDYVYEPGQYAV
RGSIIDVFSFSSEYPYRIDFFGNDVESIRTFEVDSQLSKEKKESIVIVPDLAVTGKVTTS
FLDFIPKDTTLAMRDFLWLRERIQDVHDESLTPQALASQEAEENGGITLEGKLIDGSEFT
VRALDFQRMEFGNKPTGTPDATLTFHTTAQPIFHKNFDLVAESFKEYLNRGYALYICSDS
TKQTDRIKAIFEDRGDRIQFTAVERTLHEGFADDTLKLCLFTDHQLFDRFHKYNLKSDKA
RSGKVALSLKELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKLVYQNEDVVFVS
IHSLHKVSKYKGKEGEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEKGFA
YSPDSFLQRELEASFIYEDTPDQSKATADVKQDMERDMPMDRLVCGDVGFGKTEVAIRAA
FKAVADNKQVAVLVPTTVLAYQHFQTFRDRLKGLPCRVEYLSRARTAAQAKAVIKGLEAG
DVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRT
LQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEVIADAINFEMSRNGQVFLVNNRIANL
PELKAMILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIATTIIESGIDIPNANT
IIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFSDLGSG
IHIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAELYADELKGE
GVISGEEFVEECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDRDVDAFRSRLEDRF
GPIPPETEELLRIVPLRRLAARLGVEKVFLKGGRMTLFFVNNAESPYYQSAAFGKMIDYM
MKYTRRCDLREQNGRRSMLVKDIPNVETAVSVLLEIVALPVKEKE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgacaattactgaactgcaacatcaatatgcggggcatccgaatgtagaggccctgaat
aaactgttgggggagcccgcagtcagacatatctattgcggcggcttatatgcttccgct
gcttccttgttcgcttcggcgttggttgaaaagagtccttgcccgtttgtttttatatta
ggtgacctggaagaagccggttatttttatcatgatcttacccaagtgttgggtacagag
cgcattttgtttttcccttcttcgtttcgtcgttcggtgaagtacggacagaaagatgct
gctaacgagattttgcgtaccgaagtgctcagtcgcttgcagaagggtgaggagggattg
tgtatcgtcacttatcccgatgcattagccgaaaaggtcgtatcacggcaggagttgagc
gagaataccctgaaactgcacgtgggtgagcgggtggatacgggtttcattacggatgta
ttgcatagttacgggtttgaatacgtggattatgtatacgaaccggggcagtatgccgtt
cgtggaagtattatcgacgtgttttcattttcgtccgagtatccctatcgtattgacttt
ttcggtaatgacgtggagagtatccgtacatttgaggtcgattcacagttgtcgaaagag
aagaaagagagtattgtgattgtgcccgatcttgccgtaaccggaaaggttacaacttct
tttcttgattttatcccgaaagataccactttggcgatgcgtgatttcctttggttgcgg
gagcgtattcaggatgttcacgatgaatcgctcacaccgcaggctcttgcttctcaggag
gccgaagagaatggaggcattactttggaaggaaaattgatcgatgggagtgagttcact
gttcgtgcgctcgatttccagcggatggagtttggtaacaagccgactggcacaccggat
gctaccttgacatttcatactacggcacaacctatttttcataagaatttcgatttggtg
gcggagtctttcaaagagtatctaaaccggggatatgcactttatatctgtagtgacagt
acgaaacagacggatcgtatcaaagccatttttgaggatcggggagaccggattcagttt
acggctgtggagcggactctgcatgaagggtttgcagacgataccttgaaactttgtttg
tttaccgatcaccagttgttcgaccgtttccataaatataacctgaagagtgataaagcc
cgttcgggaaaggtcgctctttcgctgaaagagttgaatcagttcacccccggtgattat
gtggtacataccgatcatggtgtgggacgtttttccggtctggtacgtattcctaacgga
gatacgacacaggaggtcatgaaactggtctatcagaatgaagatgtggtatttgtttct
atccattcgttgcataaagtttcaaaatataaaggtaaagaaggagaagccccccgactg
aacaaattgggtacgggcgcttgggagaaactgaaggagcgtacaaagacaaagattaaa
gatatagctcgtgacttgataaaactttattcacaacgtcgtgaagagaaagggtttgca
tacagtcccgatagttttttgcaacgggaattggaggcttcgttcatctatgaagatacc
cccgatcagagtaaggctacggcggatgtgaaacaggatatggaacgggatatgcctatg
gatcgcctggtatgcggagacgttggcttcggtaagactgaagtggccatccgtgccgca
tttaaagccgtagcagacaataagcaggtagccgtactggtgcctacaacggttttggca
taccaacacttccagacttttcgtgatcgcctgaaaggacttccctgccgggtagaatat
ctcagccgtgcccgtacggcggcacaggcaaaggcggtaatcaaaggattggaagctgga
gacgtgaatattctgatcggtacgcaccgtatcttgggaaaagatgtcaagttcaaagac
ctcggactgctgattattgacgaagagcagaagttcggtgtgtcggtcaaggagaagctg
cggcagatgaaggtcaatgtggatacattgacaatgacggcaacccctattccgcgtact
ttgcaattctcgctgatgggagcgcgtgacttgagtgtgatttcaactccacctcccaac
cgttatccgatacagacggaggtacatacgttcagtgaagaggtgatagctgatgccatt
aactttgagatgagtcgtaatgggcaggtttttctggtaaacaaccgtatagccaatctt
ccggaactgaaagcaatgattcttcgtcacattccggattgccggatagccatcggacac
ggacagatggagccggcggaattggaacagatcattttcggctttgtcaattatgactac
gatgtactgattgcaaccactattatcgagagtggaatcgatataccgaatgcgaacacg
attattatcaatcaggcacaaaacttcggattgagcgatctgcaccagatgcgcggacgt
gtgggacgtagcaataaaaaggcgttctgttacttgctggctcctccgttgtcttcgtta
acccccgaagccaaacgtcgcctgcaggcgatcgagaatttcagtgatctgggtagtggt
attcatattgccatgcaggatctggacattcgcggtgcgggtaatatgctgggagccgaa
cagagtggatttatcgccgatctgggttatgaaacttatcagaagatattgtcggaagct
gtgcatgaactgaaaacggatgaatttgccgaactttatgctgacgaattaaaaggagaa
ggtgtcattagtggtgaagagtttgttgaagaatgtcaggtggaaagcgatctggaattg
ctgttaccggctaattatgtgacgggcagcagcgaacgtatgttgctgtatcgggaactg
gacggactgactctcgatagagatgtagatgctttccgttcacgattggaagaccgtttc
ggccctattccgcctgagactgaagaattgttgcgtatagtaccgttaaggcgcctggct
gcccgattgggagtggaaaaagtgttcttgaaaggaggacgtatgacactgttctttgtc
aacaatgcagaaagcccgtattatcagagtgctgctttcggcaagatgatcgactacatg
atgaagtatacccgaagatgtgatttgagagagcagaacggacgtcggtctatgttggta
aaagatattccgaatgtggaaacggctgtcagtgtactactggaaattgtggcattaccg
gtgaaagagaaagagtaa
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