Bacteroides fragilis YCH46: BF3213
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Entry
BF3213 CDS
T00202
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF3213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfr03021
]
BF3213
03019 Messenger RNA biogenesis [BR:
bfr03019
]
BF3213
Transcription machinery [BR:
bfr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BF3213
Messenger RNA biogenesis [BR:
bfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BF3213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
OB_RNB
AAA_25
Mor
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAD49958
UniProt:
Q64RC3
LinkDB
All DBs
Position
3640914..3642977
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AA seq
687 aa
AA seq
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MYNIIQLNDKNLSELQAIAQELGIKKTDSLKKEELVYKILDEQAIAGATKKVAADKLKEE
RKEDKKKRSRVTVKKENADKVFSSTKNGELTKTDAKTPAAKTQPQPKTTEPTPETAKEAN
AETNATPAESVKVTPYATPKKKPGRPRKNQVETEAKPAEETTEKPETVPSAQEEKPAAQP
EAEKRPISKPILKPKPAVVDEESSILSDIDADDDFIPIEDLPSEKVELPTELFGKFESTK
AEAATAPEPVAQPQRPRVIRPRDNNNNNNNNNNNNQRNNNQRQPVQQRPMPQQNAAEAAP
VQERRVIEREKPYEFDDILTGTGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFG
LKTGDVVEGVIRPPKEGEKYFPLVKVSKINGRDAAFVRDRVPFDHLTPLFPDEKFKLCKG
GYSDSMSARVVDLFSPIGKGQRALIVAQPKTGKTILMKEIANAIAANHPEVYMIMLLIDE
RPEEVTDMARSVNAEVIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLA
RAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVI
FEEFKGTGNMELQLDRNLSNKRIFPAVNIVASSTRRDDLLLDKQTLDRMWILRKYLSDMN
PIEAMDFVKDRLEKTKDNDEFLMSMNS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatcattcaattgaacgacaagaatttgtcggaactacaagctattgcccag
gaattgggtatcaaaaaaacagactcacttaagaaagaagaacttgtctacaaaatcctc
gacgaacaagccatagccggagctactaaaaaggtagctgccgacaaactgaaagaggaa
cgcaaagaagataagaaaaaacgctctcgggtgacagtaaagaaggaaaacgccgacaag
gttttctcttctaccaagaatggagaactaaccaaaacagatgccaaaacacctgcagcc
aaaacacagccacaacctaaaacaacagaaccgaccccagaaacagctaaagaggcaaat
gccgaaacaaacgccactccggccgaatctgtcaaagtgacaccttatgccactccgaaa
aagaaaccgggacgtccccgtaaaaatcaggtagaaacagaagctaaacccgcagaagaa
actaccgaaaaaccggaaacagtaccatcggcacaagaagaaaagcccgctgcccaaccg
gaagcagaaaaacgtcccatcagcaaaccgattctcaaacccaaaccggccgttgtagac
gaagaaagctcgatcctctcggatatagatgcagacgatgattttatccccatcgaagac
ctgccttcggaaaaagtagaattgccaaccgaactgttcggcaaatttgaatcgaccaaa
gccgaagcagcaacagcccccgaacctgtggcacaaccccaacgcccgcgtgtgattcgc
ccacgagacaacaataacaacaacaataacaacaataataataaccaacgcaacaataac
cagcgtcagcctgtacaacagcgtcccatgccgcaacaaaatgccgccgaagccgcaccc
gttcaggaacgccgcgtgattgaacgtgagaaaccttatgaatttgatgatatcctcacc
ggaaccggtgtattggaaatcatgcaggatggttacggattcctccgttcgtcagactat
aactacctctcttcaccagacgatatctacgtttcgcaatcccagatcaaactgttcggt
ctgaagaccggtgacgtagtagaaggtgtaatccgtccgcccaaagaaggcgaaaaatac
ttcccactggtaaaggtttctaaaatcaacggacgtgatgccgctttcgtacgtgaccgt
gtaccgttcgaccatctcactccgctattccctgacgaaaagttcaagctttgcaaagga
ggctactccgactcgatgtcggcacgtgtagtcgacctcttttcaccaatcggtaaagga
cagcgtgccttgatcgtggctcagcccaagaccggtaaaaccatcctgatgaaagaaatc
gccaatgccatcgctgccaaccatccggaagtatatatgatcatgttgttgattgacgaa
cgtccggaagaagtaaccgacatggcccgcagtgtcaatgcggaagtgattgcttctaca
ttcgacgaacctgccgaacgccatgtgaaaattgccggcatcgtactcgaaaaagctaaa
agattggtagagtgcggacacgatgtagtgatcttcctcgactctatcacccgtctggcg
cgcgcatacaatactgtatctccggcatcaggaaaggtactctcgggtggtgtggatgcc
aatgcactacacaaaccgaaacgtttcttcggagcagcccgtaacatagagaacggaggt
tcgctcaccattatcgctactgccctgatcgacaccggttcgaagatggacgaagtaatc
tttgaagagttcaagggtacaggtaacatggagttgcagctcgaccgcaacctaagtaac
aaacgtatcttccctgctgtcaacattgtggcatcgagcacccgccgcgacgacttgctg
ctcgacaagcaaacactggaccgcatgtggattctacgcaagtatctgtcggatatgaat
cctatcgaagcaatggatttcgtaaaagacagattggaaaaaaccaaagacaacgacgag
ttcctgatgagcatgaacagctaa
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