Bacteroides fragilis YCH46: BF3320
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Entry
BF3320 CDS
T00202
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BF3320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF3320
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF3320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF3320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_21
SMC_N
UvrA_DNA-bind
AAA_16
AAA_29
nSTAND1
nSTAND3
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_22
AAA_33
SLFN-g3_helicase
ATPase
NACHT
nSTAND_NTPase5
AAA_23
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
BAD50064
UniProt:
Q64R17
LinkDB
All DBs
Position
3788870..3791653
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AA seq
927 aa
AA seq
DB search
MLMTDSKYISIKGARVNNLKNIDVNIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVE
SLSSYARQFLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARV
GKTYSPVSGEEVKKHSIEDIVNCMLSYPEGTRYTVLTQIYLHDGRTLEQQLEIDRKQGFN
RLEVNGEMVRIDEYAAGKEDVVYLLVDRMTAAKSKDAISRLTDSAETAMYEGDGMCMLRF
YQPDGTTRLHTFSTKFEADGMTFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPN
RSLSVYDGAIVCWRGEKMGEWREELIHNAEKFNFPIFTPYYELTDEQRRVLWEGNQYFHG
INDFFKMLEENQYKIQYRVMLARYRGKTLCPKCHGTRLKPEAGYVRVGGKNISELVDLPI
TELQKFFDSLTLNEHDQAVARRILTEINSRIRFLIDVGLGYLTLNRLSNSLSGGESQRIN
LATSLGSSLVGSLYILDEPSIGLHSRDTDRLVHVLRQLQQLGNTVVVVEHDEEIIRAADY
IIDIGPNAGRLGGQVVYEGDMKDLKKGSNSYTVKYLLGEETIPVPEHRRPWNNYIEIKGA
RENNLKGVDARFPLNVMTVVTGVSGSGKSTLVRDIFYRALKRELDECSERPGEFVSIEGD
LRNLRNVEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWADQPLAKQMGYTAGHFSFNNEGG
RCEECKGDGTITVEMQFMADLVLECESCHGKRFKADTLEVKFQDKNIYDVLEMTVNQAIE
FFTEHGQKKVVKKLIPLQDVGLGYIKLGQSSSTLSGGENQRVKLAYYLSQEKADPTLFIF
DEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMDVIKCADYVIDLGPEGGDKGGNIV
ATGTPEEVAACAASYTGQFLQEKLNHL
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgcttatgactgatagtaaatacatctctataaaaggggccagagtcaacaatctgaag
aatattgacgtaaacattccccgcaacaaactggtggtgatcaccggtctttccggttcc
ggaaaatcatcgctcgctttcgacaccctctatgccgagggacagcgtcgctacgtggaa
agtctcagtagctatgcccgccagtttctgggccgaatgagcaaacccgaatgtgacttt
atcaaaggcattccgcccgccattgccatcgaacagaaagtgaacagccgtaacccgcgt
tccaccgtaggtacctcgaccgaaatttacgaatacctgcgcctgctttatgcacgtgtg
ggcaaaacctacagtcccgtcagcggagaggaagtgaagaagcactccatcgaagacatt
gtaaactgcatgctctcttatccggaagggacccgctataccgtgctgacacagatttac
ctgcatgacggacgcacgctcgaacaacagttggagatcgaccggaagcaaggtttcaac
cgtcttgaagtaaacggcgagatggtgcgtatcgacgaatatgctgccggcaaagaggac
gtggtatacctgctcgtcgaccgaatgacggcagcaaaatccaaggatgccatcagtcgc
ctgaccgactctgccgaaacagccatgtacgaaggcgacggcatgtgtatgcttcgcttt
tatcagccggacggaacgacccggttgcatactttcagtaccaaattcgaagccgacggt
atgacgttcgaagaaccgaacgaccagatgttctcgttcaactccccgatcggtgcctgt
cccgtatgtgaaggattcggaaaagtgatcggtatcgacgagcacttggtggtgcctaac
cgttctttgtccgtctacgacggagccattgtctgttggcggggcgaaaagatgggagaa
tggcgcgaagagctgatccacaatgccgaaaaattcaacttcccgatctttactccttac
tacgagctaaccgacgaacagcgccgggtgttgtgggaaggaaaccaatacttccatggc
atcaacgacttcttcaagatgctcgaggagaatcagtataagattcaataccgtgtgatg
ctggcacgctatcgcggaaagacgctttgcccgaaatgccacggcacccgtctgaaaccc
gaagcgggatacgtccgcgtgggtggaaagaacatttccgaactggtagacctgcctatc
accgaattgcaaaaattcttcgactcgctcacgctgaacgaacacgaccaggccgtagcc
cgtcgtatcctgacggaaatcaacagccgcatccggttcctgattgatgtgggtctgggc
tatctcacactgaaccgcctcagcaattcgttgtcgggcggagaaagccagcgcatcaac
ctggccacttcgttgggaagcagcttggtgggcagcctttacatcctcgacgaaccgagt
atcggactccacagtcgggataccgaccgattggttcatgtgctccgccaactccagcag
ttgggcaacacggtcgtggtggtagagcacgacgaagaaatcatccgtgccgcagactac
atcatcgacatcggtccgaatgccggacgactgggcggacaggtagtatacgagggtgac
atgaaagatttaaagaaaggcagcaacagttatacggtgaaatacctgctgggcgaagag
accattcccgtgccggaacaccgtcgtccatggaacaactatatcgaaataaaaggtgcc
cgtgaaaataacctgaaaggtgtggacgcccgcttcccacttaatgtgatgacggtagtg
acgggtgttagcggttcgggaaagagcacactggtacgcgacattttttaccgcgcgctg
aaacgcgaactggacgaatgcagcgagcgtcctggagaatttgtgtccatcgaaggcgac
ctgcgcaatctgcgcaatgtggagtttgtcgatcaaaatcccatcggcaagtcttcccgc
tccaatccggtgacctacatcaaagcatacgacgaaatccgcaagctctgggctgaccag
ccgctcgccaaacaaatgggatataccgcaggacatttcagcttcaacaacgagggtggg
cgttgcgaagagtgtaaaggtgacggaaccatcacagtggaaatgcaattcatggccgac
ctggtgctggagtgtgaatcatgccacggaaaacgtttcaaggccgatacactcgaagtg
aaattccaggataaaaatatctatgacgtactggaaatgacagtcaaccaagctattgaa
ttctttacggaacatggacagaagaaggttgtgaagaaactgatccccttgcaggatgtc
ggtttgggatatatcaaactggggcaatcttcatctaccctgtcaggaggagagaaccag
cgcgtgaaactggcttactatctgagtcaggagaaagcagacccgacgctgtttatcttc
gacgaacctactacgggattgcactttcacgatatacgcaagttgctcgatgcattcgac
gcactgatccgacgcggacactccatcgtaatcatcgagcacaacatggatgtcataaaa
tgtgccgattacgtgatagacctcggaccggaaggcggagataagggcggcaatattgtg
gcaaccggaacgccggaagaggtggctgcctgtgcggcaagttatacgggacaattcctg
caggagaaactgaaccacttgtaa
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