Bacteroides fragilis YCH46: BF3427
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Entry
BF3427 CDS
T00202
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF3427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfr03019
]
BF3427
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF3427
Enzymes [BR:
bfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF3427
Messenger RNA biogenesis [BR:
bfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF3427
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF3427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
DNA_pol_A_exoN
zf-CXXC
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAD50170
UniProt:
Q64QR1
LinkDB
All DBs
Position
3916664..3918487
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AA seq
607 aa
AA seq
DB search
MNEKYQMIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEG
TAIVISPLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL
LSEADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKI
TREDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESGIVYCM
SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN
VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQNINLEK
LNRMQQYAESDICRRRILLSYFGETTTEDCGNCDVCRNPPERFDGTIIVQKALSAIARTN
QQVSITLLIDILRGNPTTEITEKAYTELKTFGAGRDIPARDWQDYLLQMLQMGYFEIAYN
ENNHLKITGSGSDVLFGRKKAMLVVIRREEPATAKRRKKSAATPTQAWAEESRSKEEDLF
EALRALRKQLADQEALPAYIVLSDKVLHLLCLSRPTTVEAFGNINGIGEYKKKKYGKDFV
ALIRQFV
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaatatcaaatgatacagaccctcaaaacttatttcggttatgatagcttc
cgtcctttgcaggaagagatcatccacaacctgataagtaaaaaagactcactggtattg
atgcctacggggggaggcaaatcaatctgctatcagcttccggctctgcttatggaaggc
acagccattgttatttcgccccttatttcactgatgaaggatcaggtagagactctacgt
gccaacggaataccggcaggtgcactaaacagcagcaatgacgaaaccgaaaatgccaac
ttacgcagagcctgcatctcaggacaacttaagctcctctacatctcgcccgagaaatta
ctgtctgaagccgactatctgctgagagacatgaccctctcactgtttgcagtggacgag
gcccactgtatttcacaatgggggcatgacttccgcccggaatatgcccggatgggattc
ttacgcaaccagttccccaatgtgcctatgatcgccctgactgctacggcagataaaatt
accagggaggatatcgtccgccagttgcaattgagacaaccgcaaatatttatttcatcg
ttcgaccgccccaacctgagcctgtctgtaaaaagaggctatcaacccaaggagaaaagt
aaagcgatcatagatttcattacccgtcacaggggggaaagcggaatcgtctactgcatg
agccgtagtaagaccgaaacagtggcacagatgctgcaaaagcacggcatccgttgcggt
gtgtatcatgccggattgtccgcccggcaacgcgacgagacacaggacgacttcatcaac
gaccggatagaggtggtatgtgccactatcgctttcggaatgggtatcgacaaatcaaat
gtgcgctgggtgatacattataacctacctaaaagcatcgaaagcttttatcaggaaatc
ggccgtgccggacgcgacggcatggcaagcgacactatcctgttctactcattgggtgac
ttgattctactgacaaagtttgcaacggagagtaaccaacagaatatcaatctggaaaaa
ttaaaccggatgcaacaatatgccgaatccgacatctgccggcggcgtatcctcttaagt
tatttcggcgaaacgactacggaagattgtggcaactgtgatgtatgccgaaatccaccc
gagcggttcgacggcaccatcatcgtccagaaagccttaagtgccattgcccgcaccaac
cagcaggtaagcatcactctcctgatagacattctgaggggaaacccaacgactgaaatc
acagaaaaagcatatacagaattgaaaacgttcggagccggaagagacatccccgcacgt
gactggcaggattatctgttgcaaatgctgcaaatgggttacttcgagatagcctacaac
gaaaacaatcacctgaaaataacagggagcggcagtgacgttcttttcggccgtaaaaag
gcaatgctggttgtcatccgcagagaagaacctgcaactgccaaaagaagaaaaaagagt
gcagccacccccacacaagcatgggcagaagaaagcagaagcaaagaagaagacctgttc
gaagcattgcgcgcattacgcaaacagttggccgatcaggaggcactcccggcttacatc
gtattgtcggataaagtattgcatctgctctgtctgtcacgtcccacgacagtcgaagcc
ttcggtaacatcaacgggattggtgaatataaaaagaaaaagtacggaaaagattttgtt
gccctgatccgtcagttcgtatag
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