Bacteroides fragilis YCH46: BF3933
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Entry
BF3933 CDS
T00202
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF3933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfr03019
]
BF3933
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF3933
Enzymes [BR:
bfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF3933
Messenger RNA biogenesis [BR:
bfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF3933
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF3933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
HTH_Crp_2
ResIII
MarR
HTH_5
HTH_9
Rrf2
HTH_20
Dimerisation
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BAD50675
UniProt:
Q64PA6
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All DBs
Position
4479467..4481371
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AA seq
634 aa
AA seq
DB search
MTYQEILKQYWGYDSFRDLQEDIITSIGNGKDTLGLMPTGGGKSITFQVPALAKEGLCIV
ITPLIALMKDQVQNLKKRGIKAIAIYSGMTRQEIVVALENCIFGDYKFLYISPERLDTEI
FRAKLRSMKISMITVDESHCISQWGYDFRPAYLKIADIRDLVPDAPVLALTATATPEVVK
DIQERLRFREENVFRMSFERKNLAYIVRPTDNKNGELLHILNRIQGSAIVYVRSRRKTKE
TTELLVNEGITADFYHAGLDNATKDLRQKRWQNGESRVMVATNAFGMGIDKPDVRIVIHL
DLPDSPEAYFQEAGRAGRDGQKAYAVILYAKSDKTTLSKRIADTFPDKDYIKDVYEHLQY
HYQMAMGDGLGCMYDFSLEEFCRKFKYFPVPADSALKILTQAGYLEYTDEQDNASRIIFT
IRRDELYKLREMGEAAEKLIQMILRSYTGVFTDYAYISEQTLAVRTGLTRQQIYDLLVML
SKRRIVDYIPHKKTPYIIYTRERIDRHYLQIPRAVYEERKERYETRIHAMVEYVTSENVC
RSRMLLRYFGEKNEHNCGQCDVCLSHRAEPDISQSTFDGLREQICALLKEHPMTPAEIAS
HINTDKEQLSEVIRFMLDEGLLSSENGLLTEKTS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
gtgacttaccaagagattttaaagcaatactggggttatgattccttccgcgacctgcag
gaggacatcataaccagcattggcaatggaaaagacacactgggactgatgcccaccgga
ggcggaaagtcaattacgtttcaggttccggcccttgccaaagagggattgtgcattgtc
atcaccccactgattgctctaatgaaggatcaggtgcagaacctgaaaaagcgcggaatc
aaagcgatagccatctattcaggaatgacacggcaagagattgtggtagcattggagaac
tgcatcttcggcgactataagtttctatacatctctcccgaacggttggataccgaaatc
ttccgggccaaactccggtccatgaaaatcagtatgattacggtagacgaaagccattgc
atctcacaatggggatatgactttcgtccggcttatctgaaaatagcggatatcagggat
ctcgtaccggatgctccagtcttggcactgaccgccacggccactcccgaagtagtgaag
gacatacaggagcgcctccgcttccgggaagaaaacgtgttccgtatgagcttcgaacga
aagaatctggcatacatcgttcgccccactgataataaaaacggggagttgctgcacata
ctgaaccggatacaaggcagcgcgattgtatatgtacgaagccgacgaaaaaccaaagaa
acaaccgagctgctggtaaacgaaggaatcacggccgacttttatcatgcgggactggat
aacgcaaccaaagatcttcgccagaaacgatggcaaaacggagaaagccgggtgatggta
gctaccaacgcattcggtatgggcattgacaaaccggacgtacgtatcgtcatccacctg
gacctgcccgactcaccggaagcctactttcaggaagcgggacgggcgggacgagacgga
caaaaggcatacgcggtgatactctatgccaagtcggataaaacaacgctcagcaaacgc
attgcagatactttcccggataaagactatataaaagatgtgtacgagcatctgcaatat
cattatcagatggcgatgggcgacgggctgggatgcatgtatgacttcagcctggaagaa
ttctgccgcaagttcaaatattttcccgtacctgcagacagcgcactgaagatattgaca
caggcaggatacctggaatataccgatgagcaagacaatgcctcacggattatcttcacg
atccgccgggatgagttgtataaactccgtgagatgggagaagccgcagagaaactgata
caaatgattctgcgatcttacacgggtgtctttacagactatgcctacatcagcgagcag
actctggcggtacgtacgggactgacccggcaacagatttacgacttgctggtgatgctg
agcaagcgccgtatcgtcgactacatcccgcacaaaaaaacaccttacattatatataca
cgtgagcggatagaccgccattatctgcaaataccccgagcagtatatgaagaacggaaa
gaacgctatgaaacccgtatccatgccatggtggaatacgtcacttcggagaatgtctgc
cgtagccggatgctgctccgctacttcggagagaagaacgaacataactgcgggcaatgt
gacgtctgcctcagccaccgcgccgaaccggatatatcacaaagcaccttcgacggactg
agagagcaaatatgtgctctgctgaaagagcatccgatgactccggcggagatagcttca
cacataaatacagataaagagcagttgagcgaagtgatacggtttatgctggacgagggc
ttactgagctctgagaacggactgcttactgaaaaaacttcctga
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