Bacteroides fragilis YCH46: BF4191
Help
Entry
BF4191 CDS
T00202
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF4191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfr03021
]
BF4191
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF4191
Enzymes [BR:
bfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF4191
Transcription machinery [BR:
bfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF4191
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF4191
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
BAD50934
UniProt:
Q64NJ8
LinkDB
All DBs
Position
complement(4782457..4786740)
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKENKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGVKAEDGIAEFDLLSEEEYLDILDTLPKDNQYLED
TDPNKFIAKMGAEAIYDLLARLDLDALSYELRHRAGNDASQQRKNEALKRLQVVESFRAS
RGRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRKGAKGEGLTFY
GPEEALIAYNEGKVDIHAPVKVIVKDLDENGNIVDVMRETSVGRVIVNEIVPPEVGYINT
IISKKSLRDIISAVIKACGVARTADFLDGIKNLGYKMAFQGGLSFNLGDIIIPKEKETLV
QRGYEEVEQVISNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTDLKNNDEVIATLYERI
LGRVSVHDIIHPQTGELLVAGGEEITEDIAKKIQESPIESVEIRSVLTCESKKGVCAKCY
GRNLATNHMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNNARLE
FEELRTVDIVDETGEAAKVVVGRLAEVRFIDVNTGIVLSTHNVPYGSTLYVADGEVVEKG
KLIAKWDPFNAVIITEATGKIEFEGVIENVTYKIESDEATGLREIIIIESKDKTKVPSAH
ILTEDGDLIRTYNLPVGGHVVIENGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVTIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSENLKAGQIVTARKLRDENSMLKRR
DLKPVEVRDAVAATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKIDKLEGM
KENVICGHLIPAGTGLREFDKIIVGSKEEYDRILANKKTVLDYNEVE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagaaaataagatcaagagcaatttctcgaaaatctctatcggtttg
gcttctccggaagaaatccttgagaattcgagtggtgaagtattaaagcctgaaaccatc
aactatcgtacatacaaacctgagcgtgacggtttgttctgcgagcgtatcttcggcccg
atcaaagactacgaatgccattgcggtaagtataaacgcatccgttataaaggtattgtc
tgcgaccgttgtggtgtagaagttactgaaaagaaagtacgtcgcgaacgtatgggacat
atccagcttgtcgtgcctgtagctcacatctggtatttccgttcgctgcctaataagatc
ggttatttgttgggactccccaccaagaaactcgattctatcatttactacgaacgctat
gttgtcattcagccgggtgtgaaagctgaagacggtatcgccgaatttgatctgttgtca
gaagaagaatacttggatattcttgatactcttcctaaagataatcagtatctggaagat
acagaccccaacaagtttattgctaaaatgggagccgaagcgatctatgatctgcttgcc
cgtctcgatcttgatgcattatcctatgagttgcgtcaccgtgccggaaatgatgcttcg
caacagcgtaagaatgaggctttgaagcgtcttcaggtggtagaatcattccgtgcatca
cgtggacggaataaacctgaatggatgattgtacgtattgtaccggtaattccgcccgaa
cttcgtccgttggttccgttggatggagggcgtttcgctacatccgatttgaacgatctt
tatcgtcgtgtgattatccgtaacaatcgtttgaaacgattgattgagattaaggctccc
gaggtgattctccgtaacgagaaacgtatgcttcaggaatctgtcgattcactgtttgat
aattcacgtaaatccagtgcagttaagactgatgctaaccgcccgttgaagtctttgtct
gacagcctgaaaggtaagcaaggacgtttccgtcaaaacttgctgggtaaacgcgttgac
tattcggcccgttcggtaattgttgttggcccggagttgagaatgcatgaatgtggtatt
cctaaactgatggctgccgaactgtacaagccgttcattatccgtaagttgatcgagcga
ggtatcgtaaagaccgtgaagtctgctaagaagatcgtggaccgtaaggagccggtgatc
tgggatattcttgaacacgtaatgaaaggtcatccagtattgttgaaccgtgctccgaca
cttcaccgtttgggtattcaggctttccagcctaagatgatcgaaggtaaagctatccaa
ttgcatccgttggcatgtacagcgttcaatgccgactttgatggtgaccagatggctgtt
cacttgcctttgagcaatgaggcagtacttgaagcacaaatgttgatgctggcttctcac
aatattctgaatcctgcaaatggtgctcctattaccgttccttcacaggatatggtgctt
ggtttgtactatatcaccaaactccgtaaaggcgccaaaggtgagggactcacattctat
ggacccgaagaagcgctgatagcttacaatgaaggcaaagtagatattcatgctccggtg
aaggttatcgtaaaagaccttgacgaaaatggaaatatcgttgatgtaatgcgtgagact
tcagtaggtcgtgtgattgtgaacgaaatagttccgcctgaagtcggatacatcaatact
attatttcaaagaaatcattgcgtgacattattagtgctgtaatcaaagcttgtggtgtt
gctcggactgctgacttccttgatggaattaaaaatttaggctacaagatggcctttcag
ggtggtctgtcattcaacttgggtgatatcattatcccgaaagagaaagagacactcgtt
cagagaggttatgaagaggtagagcaggtgatcagtaactataatatgggtttcatcacc
aataatgaacgttacaaccaggtaattgatatctggacacatgtaaactcagaattgtct
aatatcttgatgaagactatttcttcagatgatcagggtttcaactctgtgtacatgatg
cttgattccggtgcccgtggttctaaagagcagatccgtcagctctccggtatgcgtggt
ttgatggcaaaaccgcagaaggcaggtgctgaaggtggtcagatcatcgagaatcctatc
ttgtctaactttaaagagggactttctgtgttggagtactttatctctactcacggtgcc
cgtaaaggtttggcggataccgctttgaagactgccgatgcgggatacttgactcgtcgt
ctggttgacgtttcgcatgatgtgattattaatgaagaagactgcggtacgcttcgcgga
ctggtttgtactgacctcaagaacaatgacgaagttattgctactctgtacgaacgtatc
ctcggacgtgtatccgtacacgatattattcatcctcagaccggtgaattactggttgcc
ggtggtgaagaaattacagaagatatcgccaagaagattcaggaatctccgattgaaagc
gttgagattcgttcggtattgacttgcgaatcgaagaagggtgtttgtgcgaagtgctac
ggtcgtaacctggctacgaaccatatggttcagaaaggtgaggctgtcggtgtaatcgct
gcccagtctatcggtgaaccgggtacacagttgacattgcgtacattccatgctggtggt
acggctgccaacattgcggccaatgcaagtattgttgctaaaaataatgcccgtttggaa
tttgaagaactccgtacggtagatattgtggacgaaactggtgaggctgccaaagtggta
gtaggtcgtttggctgaggttcgtttcattgatgtcaatacaggcattgtactttctacc
cataacgttccttacggttctacactttatgtagccgatggtgaagtggtagaaaaaggt
aaactgattgcgaaatgggatccattcaacgctgttatcataaccgaagctaccggtaag
attgagtttgagggtgtcattgaaaatgttacttataagattgaatcggatgaagcgacc
ggacttcgagaaattattattattgagtctaaagataagactaaagttccttcggcccac
atcctgaccgaagacggtgatcttatccgtacatataatttacctgtaggtggacacgta
gtgatcgaaaatggccaaaaggtgaaagctggtgaggtaatcgttaagattccgcgtgct
gtgggtaaggctggtgatattaccggtggtcttccccgtgttactgagttgtttgaagca
cgtaacccgtcgaatcctgccgtcgtatccgaaatcgatggagaggttactatgggtaaa
gtgaaacgcggtaatcgcgaaatcatcgttacatctaagaccggtgaagtgaagaaatac
cttgttccgctgtctaagcagattctggtacaggagaatgactacgttcgtgcaggtact
ccattgtccgatggtgctacgactccggctgatattttggctattaaaggtcctacggct
gtacaggaatacatcgtgaatgaagttcaggacgtatatcgtttacagggtgtgaagatc
aatgataagcattttgagatcattgttcgccagatgatgcgtaaagtgactattgacgaa
ccgggcgatacacgcttccttgaacagcaggtagtggacaaactcgagttcatggaagag
aacgaccgcatttggggtaagaaagtggttgtagatgccggagattctgaaaacctgaaa
gccggtcagattgtcacagcccgcaagttgcgtgacgaaaacagtatgctgaaacgccgt
gaccttaaaccggttgaggtgcgtgatgctgttgctgcaacttctacccagattcttcag
ggtattactcgtgccgcattgcaaacttcaagcttcatgtctgccgcttctttccaggag
acaactaaggtactcaatgaggctgctatcaatggtaagatagataagttggaaggtatg
aaggagaatgtaatttgcggtcatttgattccggccggtacaggtcttcgcgagtttgac
aagatcattgtaggttctaaagaagaatacgatcgtattctggctaataagaagacagtg
cttgactataatgaagtagaataa
DBGET
integrated database retrieval system
