Bacteroides fragilis YCH46: BF4192
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Entry
BF4192 CDS
T00202
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF4192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfr03021
]
BF4192
03400 DNA repair and recombination proteins [BR:
bfr03400
]
BF4192
Enzymes [BR:
bfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF4192
Transcription machinery [BR:
bfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF4192
DNA repair and recombination proteins [BR:
bfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF4192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAD50935
UniProt:
Q64NJ7
LinkDB
All DBs
Position
complement(4786887..4790699)
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
FLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVVGRK
LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEP
NQSDYSIIYNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGD
VGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KINDLGFIETPYRKVDNGKVDLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKS
RQDADYPVVEPSEVELMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSE
APIVGTGIERQLVRDSRTQIAAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRI
PKFRKTNQNMTIDLRPTCNKGDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSVHVEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRV
GARIQPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIDKKL
FSRVIKNRSSKLADKALLPKIDDEFESKVADLKRILVKKLMVLTEGKVSQGVKDYLGAEV
IAKGSKFSASDFDSLDFTAIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKNLGVKFATPIFDGATLDDLNEWTDKAGLPRYCKT
YLCDGGTGERFDQPATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEGFGASHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatactgtaaatcaaagagttaattttgcttcgactaagaatccgcttgaa
tatccggatttcctggaagtacaattgaagtcattccaagactttctacaactagatacc
ccacctgagaagcgtaaaaaagagggattgtataaagtatttgccgaaaacttcccaatt
gccgacacaagaaacaattttgttcttgagtttctggactattatattgatccgccgcgc
tataccattgatgattgtatagagcgtgggctcacatatagtgttccattgaaagcgaaa
ctcaagctttactgtacagaccccgatcatgaggatttcgatacagtgattcaagatgtg
ttccttggtcctataccttacatgactgacaaggcaacttttgtcatcaatggtgctgag
cgtgtagttgtgtcgcagcttcaccgttctccgggcgtattcttcggtcagagtgtacat
gctaatggtacaaagttgtactcagcccgtatcatcccgtttaagggatcatggattgag
ttcgctaccgatattaacaacgtaatgtacgcttatattgatcgtaagaagaaattgcct
gttactacgctgttaagagctatcggctttgagaacgacaaggacattcttgagattttt
aacctggctgaagatgtgaaggttaataagactaatctcaagaaggtagtaggtcgtaaa
ctggctgcgcgtgtcttgaaaacttggattgaagatttcgttgatgaagataccggtgaa
gttgtttctattgaacgtaatgaagtcattatcgaccgtgaaacagtaatcgaaccggaa
catatagatgaaataattgactcgggcgttcaaaacatccttattcacaaggaagaaccg
aaccagtccgactactctattatatataatacccttcagaaggacccgagtaactcggaa
aaggaggctgtgctttatatctaccgtcagttgcgtaatgcagaccctgccgatgatgcc
agtgcccgtgaagttattaataacctgttcttctctgaaaaacggtatgaccttggtgat
gtaggtcgttatagaatcaataagaaattgaacctgacgacagacatggacgtgcgtgtc
ctcactaaagaagatattatcgagatcatcaaatatctgattgagctgattaactcaaaa
gcagatgtagatgatatcgaccacttgagcaaccgtcgcgtacgtactgtaggcgaacag
ttgtccaatcagttcgctgtcggtttggcacgtatgtcacgtaccatccgcgaacgaatg
aacgttcgtgacaatgaggtgtttactccgattgacctgatcaatgcgaagactatttct
tctgtgatcaattcattcttcggaactaacgcattgtcacagtttatggaccagacaaac
ccgttggctgaaatcactcacaaacgtcgtatgtctgctcttggtcctggtggtttgtct
cgtgaacgtgccggatttgaggttcgtgacgttcactatacacactacggacgcctttgt
ccgattgaaacaccggaaggtccgaatatcggtttgatttcgtcactttgtgtgtttgct
aagattaatgatctcggctttattgaaactccttaccgtaaggtagataacggaaaggta
gatctgtctgagaatggactcgtttacctgacggctgaggaagaagaagctaagatcata
gcacagggtaatgctccgttgaatgatgacggtacatttatccgtaataaggttaagtct
cgtcaggatgccgattatccggttgtagaaccttcggaagtagagttgatggacgttgct
cctcaacagattgcttctatcgctgcatctttgattcccttccttgaacatgatgacgct
aaccgtgcgttgatgggatcgaacatgatgcgccaggctgttcctttgctgagaagcgaa
gctccaatcgtaggtacaggtattgaacgccagctggtacgtgattcccgtactcagatt
gctgccgaaggtgatggagtgattgattttgtagatgctactactattcgtattctatac
gatcgtacagaagatgaagagtttgtaagttttgagccggcattaaaagaatatagaata
ccgaagttccgtaaaacgaaccagaatatgacaatcgaccttcggccaacttgcaataaa
ggtgatcgtgtgacgaaaggtcagattctgacagaaggttattctactgaaaatggagaa
ctcgctttgggtaagaatctgttggttgcttacatgccttggaaaggttataattacgag
gatgctatcgtgttgaatgaacgtgtggttcgtgaagacttgctgacttcagtacacgta
gaagagtattcactcgaagttcgtgaaaccaagcgaggaatggaagagttgacttctgat
attcctaacgtgagtgaggaagccactaaggatttggacgagaatggtatcgtacgtgtc
ggtgcacgtattcagccgggtgatatattgattggtaagattacaccgaaaggtgaatct
gatccttctccggaagaaaaattgcttcgtgctatctttggtgataaagccggtgatgtg
aaagatgcttctttgaaagcatctccttctctgaagggggtaattattgataagaaattg
ttctcacgtgtcatcaagaatcgtagttctaagttggctgataaggcgttgcttccgaaa
attgacgatgaatttgagtctaaggtagctgacttgaaacgtatcttggtaaagaaattg
atggtattgacagaaggaaaggtatctcagggcgtgaaagactacttgggagctgaagtc
atagctaaaggctctaagtttagtgcttctgacttcgattcacttgatttcaccgcgatt
cagctgagcgactggaccaatgatgatcatgcgaatggtatgattcgtgacttgatcctg
aactttatcaagaagtacaaagaacttgatgctgaactgaagcgtaaaaagttcgctatc
acaatcggtgatgaactgcctgcaggtatcattcagatggcgaaagtatatattgctaaa
aaacgtaagattggtgtaggtgataagatggccggacgtcacggtaataaaggtattgtg
tcacgtgttgttcgtcaagaagacatgccgttccttgaagatggaactccggtagacatt
gtattgaacccgttgggtgtgccttctcgtatgaatatcggtcagatttttgaggctgtt
ctcggacgtgccggaaagaatttgggtgtgaagttcgctacgccgatttttgacggtgca
actttggatgacttgaacgagtggacagacaaagccggtctaccacgctattgcaaaact
tatctttgtgatggtggtacaggcgaacgctttgaccaaccagcaaccgtaggtgttacc
tatatgttgaaactcggtcacatggttgaagacaagatgcacgcacgttctatcggacca
tactcattgattactcagcaacctcttggtggtaaagctcagtttggtggtcagcgtttc
ggagagatggaggtttgggcactcgaaggtttcggtgcatcgcatattctccaggagatt
ctgacaatcaagtcggacgacgttgttggacgttctaaggcttacgaagccattgtaaag
ggcgaacccatgccacagccgggtattccggaatctctgaacgtgttgttgcacgaatta
agaggattgggcctgagcatcaatttggaataa
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integrated database retrieval system
