Bacteroides fragilis YCH46: BF4361
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Entry
BF4361 CDS
T00202
Name
(GenBank) RNA polymerase sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr02020
Two-component system
bfr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BF4361
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BF4361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfr03021
]
BF4361
Transcription machinery [BR:
bfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BF4361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
HTH_12
SF3b1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BAD51099
UniProt:
Q64N38
LinkDB
All DBs
Position
4966892..4968370
Genome browser
AA seq
492 aa
AA seq
DB search
MAQGSRQIQSQAQQQIQTLSPQQILVVKLLELPAVELEDRVHAELLENPALEEGKEESTS
DETTPAETSEGETEGDTDYDSLSDYLTEDDIPDYKLQENNRSKGEQAEEIPFSDATSFYE
ILREQLGERNLTEHQRELAEYLIGSLDDDGLLRKSLESIGDELAIYAGINATEEELEEAL
RIVQDFDPPGLGARSLQECLLIQIRRKKQSHCTDPLLETEEEIISECYEEFTRKHWEKII
KKLGLDEEHFHKALEEITKLNPRPGASLGEAIGRNLQQIVPDFIVDTYDDGTINISLNNR
NLPELRMSRDFTEMVEEHTKNKANQSKESKEAMMFLKQKMDAAQGFIDAVKQRQNTLMTT
MQAIIDLQRPFFLEGDESLLRPMILKDVAERTGLDISTISRVSNSKYVQTNYGIYPLKFF
FSDGYTTEDGEEMSVREIRKILKECIDSEDKKKPLTDDELAEILKEKGYPIARRTVAKYR
QQLNIPVARLRK
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaggttcccgtcagatacaatcgcaggcgcagcagcagatacaaacgctctca
ccgcagcagattctggtagtgaaactactggagctaccggctgtggagctagaagaccgt
gtacatgccgaactgctggagaatcccgcccttgaagaaggcaaagaagaaagcacctcc
gacgagaccactcctgccgaaacctccgaaggagagacggaaggcgatacagactatgac
tcgctgagcgactatctgaccgaagacgacatccccgactataaacttcaggaaaacaac
cgctccaaaggcgagcaggcagaagagattccgttttcggacgcgacgtcattctacgaa
atcctgagagaacagctcggcgaacgcaacctgaccgaacatcagcgcgaactggcggaa
tacctgatcggttcgctggacgacgacggcctgctccgcaaatccctcgaaagcatcggg
gacgaactggccatctatgccggtatcaacgctacggaagaggaactggaggaagccctg
agaatcgtacaagatttcgaccctcccggactgggcgcacgcagcctgcaggaatgcctg
ctgatacagatccgccgcaaaaaacagtcccactgcacagatcctctgctggagacggaa
gaagaaatcatcagtgaatgttacgaagagttcacccgcaagcattgggaaaagatcatc
aaaaagctgggactggacgaggaacacttccataaggcacttgaagagatcaccaagctc
aacccccgtccgggcgcatcgctgggtgaagccatcggacggaacctgcaacagatcgtc
cccgatttcatagtagacacctacgatgacggaaccatcaacatcagcctcaacaaccgc
aatctaccggagctgcgcatgagccgcgacttcacggagatggtagaggaacatacgaag
aacaaggccaaccaatcaaaagaatcgaaagaggccatgatgttcctcaagcagaagatg
gacgccgcacaaggcttcatcgacgccgtgaagcaacgccagaatacattgatgaccacc
atgcaggccatcatcgacctgcaacgccccttcttcctcgaaggcgacgagtcattgctc
cgcccgatgatcctgaaggacgtggcggaacgcaccgggctggacatctcgaccatctca
cgcgtcagcaacagcaaatacgtgcaaacgaattacggcatttatcccctgaagttcttc
ttcagcgacggatacaccaccgaagacggtgaagagatgtcggtacgcgagatacggaag
atactgaaagaatgcatcgacagcgaggacaaaaagaaaccgctgaccgatgacgaactg
gccgaaatactgaaagagaaaggatatcccatcgcacgccgcacggtggccaagtaccgc
cagcaactcaacattccggtggcgagactgagaaaataa
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integrated database retrieval system
