Bacteroides fragilis YCH46: BF4476
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Entry
BF4476 CDS
T00202
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
bfr
Bacteroides fragilis YCH46
Pathway
bfr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
bfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BF4476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfr03021
]
BF4476
Transcription machinery [BR:
bfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BF4476
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
GerE
Sigma70_ECF
UPF0122
HTH_23
PF0610-like_N
HTH_24
HTH_11
HTH_20
HTH_40
HTH_28
HTH_5
HTH_38
HTH_AsnC-type
VF530
HTH_10
DUF722
HTH_29
PCI
HTH_Tnp_ISL3
HTH_Mga
DUF8612
DUF8040
Motif
Other DBs
NCBI-ProteinID:
BAD51213
LinkDB
All DBs
Position
5139217..5139768
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AA seq
183 aa
AA seq
DB search
MNEKEAIIKLKTCNDKAAFAFLYRSYWAKVYNFTRLYITSAVDVEEIVQEVFIKIWENRE
ALDEEQNFAGYLFITMRNLVFNRSRKNLNEPFYQLSVIEAVEESYDIEEELDAANLRTHI
SALISMLPPRQQEVFRLSRDEELSYREIAERLQISERTVEHHISDALKFLRKNIKLYLLF
LSL
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaagaagcaattattaaactaaagacctgcaatgataaagccgcctttgca
ttcctctatcgctcttattgggctaaggtttacaattttacgcgactttacatcacctct
gcggtcgatgtggaagaaatcgttcaagaagtttttattaaaatttgggagaatcgggaa
gctttggatgaagaacaaaattttgccggatacttatttatcacgatgcgcaaccttgtt
ttcaaccgttcccgtaagaatctgaatgaacccttctaccaactatcagtgatagaagct
gtcgaagaatcatacgatatagaagaagaattggacgcagccaatctgcgcacacatatc
tcagcactgatctcaatgctgcctccccggcagcaggaagtgtttcgtttaagcagggat
gaggaactttcttatcgcgaaattgcagaaagactacaaatatcagaaagaacagtggaa
caccacatctccgatgccctaaagtttctacgaaaaaacatcaaactctatttactgttc
ctttcattataa
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integrated database retrieval system
