Brachyistius frenatus (kelp perch): 138614239
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Entry
138614239 CDS
T10614
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03020
RNA polymerase
bfre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
138614239 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
138614239 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfre03021
]
138614239 (polr2b)
03400 DNA repair and recombination proteins [BR:
bfre03400
]
138614239 (polr2b)
Enzymes [BR:
bfre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138614239 (polr2b)
Transcription machinery [BR:
bfre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
138614239 (polr2b)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
138614239 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
138614239
NCBI-ProteinID:
XP_069543649
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcagtacgatgaagatgatgatgaaatcactccagat
ctgtggcaggaagcgtgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cggcagcagctggattcgtttgatgagttcatccagatgtctgttcagaggattgtggag
gatgctccacctatcgacctgcaggctgaagcccagcacacctcgggggaggtggaggag
ccgcctcgttacctgttgaagtttgagcagatctacctgtccaagcccactcactgggag
agagatggagctccttctcccatgatgcccaatgaagcacgattacgaaacctcacgtac
tctgcccccctttatgttgacatcacaaagaccatcataaaagagggggaggaccagcta
cagactcaacaccagaagacctttattgggaaaattcccataatgcttcgctccacctac
tgtctgctgagcggtctgacagaccgagacctgtgcgagcttaacgagtgtccgctggat
cccggaggttatttcatcatcaacggctccgagaaggtgctcatcgctcaggaaaagatg
gccaccaacacggtgtacgtcttcgccaagaaggactccaagtacgcctacaccgccgag
tgccggtcctgtttggagaactcgtctcggcccaccagcactatctgggtcagcatgatg
gccaggggaggacagggagtgaagaagagtgcgatcggtcagaggatcgtgtccacgctg
ccctacatccgacaggaagttcccatcatcatcgtgttccgagcgctgggcttcgtgtcg
gaccgagacatcctggagcacatcatctacgactttgacgaccccgagatgatggagatg
gtaaagccgtctctggatgaagcgtttgtgatccaggagcagaacgtggcgctgaacttc
atcggctccagaggagcgaaacccggagtgacgaaggagcgacggatcaaatatgccaaa
gaagttctgcagaaagaaatgctgccgcacgtcggagtcagcgacttctgtgagaccaag
aaggcgtacttcttagggtacatggtccacaggttgctgcttgccgctctgggcagacgt
gagctggacgacagagatcactatggcaacaagaggctggacctggctgggccactgttg
gccttcctgtttcgagggatgtttaagaacctgctgaaggagatcaggatttacgctcag
aagttcatcgaccgaggaaaagacttcaacctggagctcgccatcaaaactcgaatcatc
tcagacggacttaagtactcgctggccaccgggaactggggtgacgtcaaaaaggctcat
caggcccgagccggagtgtcccaggtgttgaaccgtctgaccttcgcgtccacactgtct
cacctccgccgagtcaactctccgatcggcagagatggaaaactggcgaagccccgacag
ctgcacaacacgctgtgggggatggtgtgccctgctgagacgcccgagggtcacgctgtg
ggcctggtgaagaacctggccctgatggcctacatctctgtgggatcacagccatccccc
atcctggagtttctggaggagtggagtatggagaacctggaggagatctcgcctgctgcc
atcgctgatgccactaaaatctttgtgaacggctgctgggttggaatccacaaagatccg
gagcagctgatgaacacactgaggaaacttcgcagacagatggacattatcgtgtctgag
gtgtcgatgatcagagacattcgagaacgtgaaatcaggatttacaccgacgccggacga
atctgcagaccgctgctgatcgtagagaaacagaagctgctgctgaagagacgacacatc
gaccagctgaaggagagagaatacaacaactacagctggcaggacctggtggcgagcggc
gtggtggagtacatcgacactctggaggaggagacggtcatgctcgcaatgacccctgac
gacctccaggaaaagggtgtggcctactgctccacctacactcattgtgaaatccacccg
tccatgatccttggagtctgcgcttccatcatccccttccctgaccacaaccagtctccc
aggaacacgtatcagtccgccatgggcaaacaggctatgggcgtctacatcaccaacttc
catgtgcgaatggacacactggctcacgtgttgtactaccctcagaaaccgctagtcacc
acccgatccatggagtacctgcgcttcagagagctgcctgcaggtatcaattcaatcgtg
gcgatcgcctcgtacacgggatacaaccaggaggactcggtgatcatgaacaggtcggct
gtggatcgaggcttcttcaggtctgttttctatcgatcctacaaagagcaggagtcgaag
aaaggttttgatcaggaggagatctttgagaagccgacacgtgaaacctgtcagggtatg
agacacgccatctacgataaactggatgatgacggactcatcgcacctggtgtccgtgtg
tccggtgaggacgtcatcatcgggaagacggtgacgctgccggagaacgacgatgagctg
gacagcaccaaccggcgctacacaaagagagactgcagcaccttcctgaggaccagcgag
accggcatcgtggaccaggtcatggtgaccctgaaccaggagggctacaagttctgcaag
atcagggttcgttcagttcggattcctcagatcggagataaattcgccagccgacacgga
cagaaaggaacgtgtgggattcagtacagacaagaggacatgccatttacctgtgaagga
atcacacctgacatcatcatcaaccctcacgccatcccgtccagaatgacagtcggtcat
ctgatcgagtgtctgcagggcaaggtttctgctaacaaaggtgagatcggtgacgccacg
ccgtttaacgacgccgtcaacgtgcagaaagtgtcgaacctgctgtcagagtacggatac
cacctgagaggaaatgaggttttgtataatggcttcaccgggaggaagctgacctctcag
atcttcgtcggcccgacgtactatcagcgcctgaagcacatggtggacgacaagatccac
tcgagggcccggggccccgtccagatcctcaacaggcagcccatggagggacgatcacga
gatggcggtctgcggttcggtgagatggagcgtgactgtcagatcgctcacggagcagct
cagttcctcagagaacgtctgttcgaggcatccgatccgtaccaggttcacgtgtgtaac
ctgtgtggactcatggccatcgccaacacacgcacgcacacgtatgaatgtcgaggctgc
cgcaacaaaactcagatctctcttgtccggatgccgtacgcctgtaagcttctgttccag
gagttgatgtcgatgagcatcgctcctcgtatgatgacttcgtag
DBGET
integrated database retrieval system
