Brachyistius frenatus (kelp perch): 138614277
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Entry
138614277 CDS
T10614
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138614277 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfre03041
]
138614277 (sf3b1)
03036 Chromosome and associated proteins [BR:
bfre03036
]
138614277 (sf3b1)
Spliceosome [BR:
bfre03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138614277 (sf3b1)
Complex B
138614277 (sf3b1)
Complex C
U2 SnRNP specific factors
138614277 (sf3b1)
Chromosome and associated proteins [BR:
bfre03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
138614277 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
138614277
NCBI-ProteinID:
XP_069543716
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MLEQNLSKEEREIRQQLAEKAKSGDLKAVNGSAASQAVIKRKRRWDQTADQTPTNATPKK
MSSWDQADVSTETPGHTPAHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGA
ATPGRDTPGHATPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGET
PTPGASKRKSRWDETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAW
RWEREIDERNRPLTDEELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHM
QVEDRTTKQMNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKN
GTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRN
TTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSL
VEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYI
KTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRK
MVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVK
PYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHV
IQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQ
VYNDDKNVYVRYELEYVL
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcagaacctgtccaaagaggagagagagattcgtcagcagctggcagagaag
gccaaatcaggggacctgaaagctgtcaacgggtccgctgcctcccaagctgtcataaaa
cgtaagcgtcgctgggaccagacagctgaccaaaccccaaccaatgctacacccaaaaag
atgtccagctgggaccaagctgacgtctcgactgagactccaggacacacccctgcacac
acaccttcaaacagccgatgggatgaaacccctggtcgccctaaaggcagtgagaccccc
ggggccactcccagtagtcgcatgtgggaccccactccgagccacacgcctgccggggcc
gccacccctggcagggacacgcctggccacgccacgcctggtcacggtggagccacagga
agcgttcgcaagaaccgctgggatgaaaccccgaagacggagagggagaccccgggacac
ggcagcggctgggcggaaaccccacgaacagaccgaggagacgagtcggtgggcgagact
ccaaccccaggagccagtaagaggaagtctcggtgggatgaaaccccggccagccagatg
ggatcttcaaccccactactcaccccaggaaaaactcccataggaacgcctgctatgaac
atggcgacccccaccccgggacacctgatgagcatgactccagagcagctgcaggcatgg
aggtgggagagggaaatagatgagaggaaccggcctcttacagacgaggagcttgatgcc
atgtttcctgagggatacaaggtcctacctcctcctgcaggctatgtaccaatccgtact
ccggcccgtaagctgtcggccacgcccacacccatcggaggtatgacgggcttccacatg
caggtagaggatcgcaccacgaaacagatgaacgaccagccctcagggaacctccccttc
ctcaaacctgacgacatccagtattttgacaaactcctggtggaagtggatgagtccacg
ctgagccccgaggagcagaaagaaaggaagataatgaagctgctgctgaagattaaaaat
ggaacaccgcccatgaggaaggccgccctgcgtcagatcacggataaggctcgtgagttc
ggagcaggtcccctcttcaaccagatcctgccgctgctcatgtcccccaccctggaggac
caggagcgccacctgctggttaaagtcattgaccgcattctttacaaactggacgacctg
gtccgaccatacgtgcacaagatcctggtggttatcgagccgctgctgattgatgaggac
tattacgccagagtagaaggcagagagatcatctccaacttggcgaaggctgctggtttg
gctacgatgatctccacgatgcgacctgatattgacaacatggacgagtacgtcagaaac
acgacagctcgagcctttgccgtcgtggcctctgccctgggaatcccctccctcctgccc
ttcctcaaggctgtgtgtaaaagcaagaagtcctggcaggctcggcacaccggcatcaag
atcgtgcagcagatcgccatcctcatgggctgcgccatcctgcctcaccttcgcagcctg
gtggagatcatcgaacacggtctggtggatgagcagcagaaagtgaggaccatcagtgct
ctggctatagctgccctcgctgaagccgctacgccctacggtatcgagtcctttgactcg
gtcctcaaaccactgtggaagggcatcaggcagcacagagggaagggtctggctgctttc
ctcaaagctatcggttatctcatcccattgatggatgctgaatacgcaaactactacacc
agagaagtgatgctgatcctcatcagagagtttcagtcccctgacgaggagatgaaaaag
attgtactcaaggtggtgaagcagtgctgcggcactgacggcgtggaggccaactacatc
aaaaccgagatcctgccccccttcttcaagcacttctggcagcacaggatggctctggac
agacgcaactaccgacagctggttgacaccacggtggagttggctaacaaagtgggagcc
gcagagatcatttctcgcatcgtggatgacctgaaggacgaggctgagcagtacagaaag
atggtgatggagaccattgaaaaaataatgggcaacctgggtgcagctgacatcgaccac
aagctggaggagcagctgatcgacgggatcctgtacgccttccaggaacagaccacagag
gactcggtgatgctgaacggcttcggtaccgtggtcaacgccctcgggaagcgcgtgaag
ccctacctgcctcagatctgcggtacggtgctttggcgtctcaacaacaagtcggccaaa
gtgcgccagcaagccgctgatctgatctctcgtacagccgtggtcatgaagacctgccag
gaggagaagctgatgggtcacctgggtgtggtgctgtacgagtacctgggagaggagtac
cccgaggtgttgggcagcatcctgggagctctgaaggccatcgttaacgtgatcggtatg
cacaagatgactccaccaatcaaagacctgcttcctcgcctgactcccatcctgaagaac
cgacacgagaaggttcaggagaactgcatcgacctggtgggcaggatcgccgacaggggt
gctgaatatgtgtcggccagggagtggatgagaatctgctttgagctgctggagctgctg
aaggctcacaagaaggccatccgcagagccaccgtcaacacgttcggttatatcgccaaa
gccatcggacctcacgacgtcttggccactctgctcaacaacctgaaggtccaggagcgt
cagaaccgagtctgcacgaccgtggccatcgccatcgtcgccgagacctgctcgccgttc
accgtgctgccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaacggc
gtgctcaagtcgctctccttcctgttcgagtacatcggcgagatgggaaaagactacatc
tacgctgtcacgccgctgctggaggacgcgctcatggacagagacctggtccaccggcag
acggccagcgccgtggtccagcacatgtctctgggcgtctacggcttcggctgcgaagac
tccctcaaccacctgctgaactacgtgtggcccaacgtgttcgagacgtcgcctcacgtc
atccaggccgtgatgggggccctggaggggctgagggtcgccatcgggccctgccgcatg
ctgcagtactgcttacagggtttgttccatccggcccggaaggtgcgtgacgtctactgg
aagatctacaactccatctacatcggctcccaggacgccctgatcgcacactacccacag
gtgtacaacgacgacaagaacgtgtacgtgcgctacgagctggagtacgtcctgtaa
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