KEGG   Brachyistius frenatus (kelp perch): 138614277
Entry
138614277         CDS       T10614                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
bfre  Brachyistius frenatus (kelp perch)
Pathway
bfre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bfre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138614277 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bfre03041]
    138614277 (sf3b1)
   03036 Chromosome and associated proteins [BR:bfre03036]
    138614277 (sf3b1)
Spliceosome [BR:bfre03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    138614277 (sf3b1)
 Complex B
    138614277 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    138614277 (sf3b1)
Chromosome and associated proteins [BR:bfre03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    138614277 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG GST_N_4 DUF2298
Other DBs
NCBI-GeneID: 138614277
NCBI-ProteinID: XP_069543716
LinkDB
Position
Unknown
AA seq 1158 aa
MLEQNLSKEEREIRQQLAEKAKSGDLKAVNGSAASQAVIKRKRRWDQTADQTPTNATPKK
MSSWDQADVSTETPGHTPAHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGA
ATPGRDTPGHATPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGET
PTPGASKRKSRWDETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAW
RWEREIDERNRPLTDEELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHM
QVEDRTTKQMNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKN
GTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRN
TTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSL
VEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYI
KTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRK
MVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVK
PYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHV
IQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQ
VYNDDKNVYVRYELEYVL
NT seq 3477 nt   +upstreamnt  +downstreamnt
atgttggagcagaacctgtccaaagaggagagagagattcgtcagcagctggcagagaag
gccaaatcaggggacctgaaagctgtcaacgggtccgctgcctcccaagctgtcataaaa
cgtaagcgtcgctgggaccagacagctgaccaaaccccaaccaatgctacacccaaaaag
atgtccagctgggaccaagctgacgtctcgactgagactccaggacacacccctgcacac
acaccttcaaacagccgatgggatgaaacccctggtcgccctaaaggcagtgagaccccc
ggggccactcccagtagtcgcatgtgggaccccactccgagccacacgcctgccggggcc
gccacccctggcagggacacgcctggccacgccacgcctggtcacggtggagccacagga
agcgttcgcaagaaccgctgggatgaaaccccgaagacggagagggagaccccgggacac
ggcagcggctgggcggaaaccccacgaacagaccgaggagacgagtcggtgggcgagact
ccaaccccaggagccagtaagaggaagtctcggtgggatgaaaccccggccagccagatg
ggatcttcaaccccactactcaccccaggaaaaactcccataggaacgcctgctatgaac
atggcgacccccaccccgggacacctgatgagcatgactccagagcagctgcaggcatgg
aggtgggagagggaaatagatgagaggaaccggcctcttacagacgaggagcttgatgcc
atgtttcctgagggatacaaggtcctacctcctcctgcaggctatgtaccaatccgtact
ccggcccgtaagctgtcggccacgcccacacccatcggaggtatgacgggcttccacatg
caggtagaggatcgcaccacgaaacagatgaacgaccagccctcagggaacctccccttc
ctcaaacctgacgacatccagtattttgacaaactcctggtggaagtggatgagtccacg
ctgagccccgaggagcagaaagaaaggaagataatgaagctgctgctgaagattaaaaat
ggaacaccgcccatgaggaaggccgccctgcgtcagatcacggataaggctcgtgagttc
ggagcaggtcccctcttcaaccagatcctgccgctgctcatgtcccccaccctggaggac
caggagcgccacctgctggttaaagtcattgaccgcattctttacaaactggacgacctg
gtccgaccatacgtgcacaagatcctggtggttatcgagccgctgctgattgatgaggac
tattacgccagagtagaaggcagagagatcatctccaacttggcgaaggctgctggtttg
gctacgatgatctccacgatgcgacctgatattgacaacatggacgagtacgtcagaaac
acgacagctcgagcctttgccgtcgtggcctctgccctgggaatcccctccctcctgccc
ttcctcaaggctgtgtgtaaaagcaagaagtcctggcaggctcggcacaccggcatcaag
atcgtgcagcagatcgccatcctcatgggctgcgccatcctgcctcaccttcgcagcctg
gtggagatcatcgaacacggtctggtggatgagcagcagaaagtgaggaccatcagtgct
ctggctatagctgccctcgctgaagccgctacgccctacggtatcgagtcctttgactcg
gtcctcaaaccactgtggaagggcatcaggcagcacagagggaagggtctggctgctttc
ctcaaagctatcggttatctcatcccattgatggatgctgaatacgcaaactactacacc
agagaagtgatgctgatcctcatcagagagtttcagtcccctgacgaggagatgaaaaag
attgtactcaaggtggtgaagcagtgctgcggcactgacggcgtggaggccaactacatc
aaaaccgagatcctgccccccttcttcaagcacttctggcagcacaggatggctctggac
agacgcaactaccgacagctggttgacaccacggtggagttggctaacaaagtgggagcc
gcagagatcatttctcgcatcgtggatgacctgaaggacgaggctgagcagtacagaaag
atggtgatggagaccattgaaaaaataatgggcaacctgggtgcagctgacatcgaccac
aagctggaggagcagctgatcgacgggatcctgtacgccttccaggaacagaccacagag
gactcggtgatgctgaacggcttcggtaccgtggtcaacgccctcgggaagcgcgtgaag
ccctacctgcctcagatctgcggtacggtgctttggcgtctcaacaacaagtcggccaaa
gtgcgccagcaagccgctgatctgatctctcgtacagccgtggtcatgaagacctgccag
gaggagaagctgatgggtcacctgggtgtggtgctgtacgagtacctgggagaggagtac
cccgaggtgttgggcagcatcctgggagctctgaaggccatcgttaacgtgatcggtatg
cacaagatgactccaccaatcaaagacctgcttcctcgcctgactcccatcctgaagaac
cgacacgagaaggttcaggagaactgcatcgacctggtgggcaggatcgccgacaggggt
gctgaatatgtgtcggccagggagtggatgagaatctgctttgagctgctggagctgctg
aaggctcacaagaaggccatccgcagagccaccgtcaacacgttcggttatatcgccaaa
gccatcggacctcacgacgtcttggccactctgctcaacaacctgaaggtccaggagcgt
cagaaccgagtctgcacgaccgtggccatcgccatcgtcgccgagacctgctcgccgttc
accgtgctgccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaacggc
gtgctcaagtcgctctccttcctgttcgagtacatcggcgagatgggaaaagactacatc
tacgctgtcacgccgctgctggaggacgcgctcatggacagagacctggtccaccggcag
acggccagcgccgtggtccagcacatgtctctgggcgtctacggcttcggctgcgaagac
tccctcaaccacctgctgaactacgtgtggcccaacgtgttcgagacgtcgcctcacgtc
atccaggccgtgatgggggccctggaggggctgagggtcgccatcgggccctgccgcatg
ctgcagtactgcttacagggtttgttccatccggcccggaaggtgcgtgacgtctactgg
aagatctacaactccatctacatcggctcccaggacgccctgatcgcacactacccacag
gtgtacaacgacgacaagaacgtgtacgtgcgctacgagctggagtacgtcctgtaa

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