Brachyistius frenatus (kelp perch): 138614850
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Entry
138614850 CDS
T10614
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138614850 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138614850 (xab2)
03041 Spliceosome [BR:
bfre03041
]
138614850 (xab2)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138614850 (xab2)
Spliceosome [BR:
bfre03041
]
Complex B
Other components
Prp19-related factors
138614850 (xab2)
Complex C
138614850 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
Suf
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
Tcf25
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
138614850
NCBI-ProteinID:
XP_069544543
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTEPTFEEINNCHERALVFMHKMPRIWLDYCQLLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
FLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGRLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETNAEMGQHEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETQERHHMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELAKQANPDEINIDDDDEDDDEDQGPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgttaaatggaaaacctgatgttatgtttgaagatgacgatctgccttacgaa
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagtttaaa
cagaatggacccaaatccatcctgaacatgatttatgagcgggccctgaaagagctgcct
ggcagctataaactgtggtacaattatctgagagagagacggaaacaagtcaaagggaaa
tgtgtcactgaaccaacttttgaagagatcaataattgccatgaaagggcactggtgttc
atgcataagatgccaagaatatggctcgattactgccagttacttgtgtctcagtgcaag
atcacaagaagccggcgaacatttgaccgtgcgcttagagctcttcctgttactcagcac
ccacgcatctggcctctgtatctccgctttgtccgtaacctgcccctgcctgagacagcc
atccgggtgtaccgcaggtacctcaagctttctccagagaacgctgaggaatacatagac
ttcttacggtctgttggccgcttggatgaagcagctctgcgactagcagctgtcgtcaat
gacgaaagctttgtgtctaaagagggcaagtctaactaccaactgtggcatgaactatgc
gacctgatctcccagaatcctgataaggtgacctccctgaacgttggagccatcatccga
ggaggcctcactcgcttcacagaccaacttggaagactttggtgctcgttggctgactat
tacatcaggagtggccactttgagaaagcacgtgatgtgtatgaggaggccatccttaca
gtggtgacagtaagggatttcacacaagtgtttgatagttacgcccagtttgaagagagc
atgatcgctgccaagatggagaccaatgctgagatggggcaacatgaagatgatgacata
gacctggagcttagattggcccgttttgagcagctgatagcccgacggcccctcctgttg
aacagcgtactactgaggcaaaacccccacaatgtccacgagtggcacaagcgggtaaaa
ctgtatgagggtaatccacggcagatcatcaacacttacaccgaggcagtacagactgtg
gatccgatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctac
gaggaaaatgagcagcttgatgacgccaggacgatctttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagctccgc
catgagaactacgaacaggcactacgcatactgaggaaagctacagccatcccatccagg
aaagcagagtactttgatgcatctgagccggtccaaaaccgagtctacaagtccttgaag
gtctggtctatgttggcagacttggaggagagtcttggcacgttccagtctacaaaagca
gtgtatgatcgcattattgatctccgcatcgccactccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaagaaagctttaaagcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgatatgggggcaagaagctggagagagccagagatctatttgaacaggccctggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgccaaattggaggaggag
tatggattggcacgacacgccatggctgtctatgaaagagcaacgcaggctgtagaaact
caggaaagacatcatatgtttaatatctacatcaagagagcagctgaaatttatggagtt
acacataccagagcgatttaccagaaggctattgaggtccttcctgatgagcatgcaagg
gacatgtgtctgcgatttgcagatatggagagtaaactgggtgagattgatcggggtaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctcatttctggcag
acctggaaagaatttgagatccgccatggaaacgaggacaccatcagagaaatgttgagg
atcaaacgcagtgtccaggcaacatacaacacgcaggtcaactttatgtcctcccagatg
ctgaaggccacaacaagctccacaggcactgtgtcagatcttgctccaggccagatggga
attgatgatatgaagatgttggaacagaaagcacagcagcttgctgcagaagccgagcag
gacaaacccaagcccaaagagaagatcctctttgtcaggagtgacacttctcgcagtgag
ttggcagagcttgccaaacaagccaatcctgatgagatcaacattgatgatgatgatgag
gatgacgatgaagaccaaggaccggatgaggtgcagcttgaacagaagagcgtccccacc
gcagtctttggagggcttaaagatgactga
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integrated database retrieval system
