Brachyistius frenatus (kelp perch): 138615693
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Entry
138615693 CDS
T10614
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138615693 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138615693 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138615693 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bfre00535
]
138615693 (col9a1a)
Proteoglycans [BR:
bfre00535
]
Extracellular matrix (ECM) proteoglycans
Others
138615693 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138615693
NCBI-ProteinID:
XP_069545550
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MALSRICRESLLVLFLQIVLICSAQRGPVGPRGPAGPPGVAGVPGVDGIDGDRGEDSTVN
GGPGLDGDNGKDGASGASGLPGADGPVGPPGDPGPVGLKGPKGELGARGPTGEPGVGPDG
LDGIPGTDGLPGELGKVGPPGARGRRGQVGPPGAAGSRGPPAVYQGEDLCPNACPSGLHG
HSGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGMSGEVGAQGLPGPGGARGLAGIIGAKG
DRGPRGKPGDLGPQGILGGPGDAGQRGAIGEIGPRGVLGDQGPSGIRGVPGPKGEPGLPG
PDGREGIPGLPGSKGLPGKNGAPGDAGPQGLPGLPGAYGQKGHGGSMGNKGDPGGVGLMG
FPGKQGERGEQGEVGPVGPRGGPGERGVRGHDGPAGLPGARGSEGDPGLPGLPGPAGYRG
LKGDRGAVGLDGPKGDQGSVGAEGTPGEGGELGDQGEPGEKGSSGPPGETGNKGPEGGRG
QQGKEGKAGQLGPRGMQGDMGVPGLPGTQGPAGKTPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGISGLPGPPGPPGPPGVSGENGFPGHTGSRGLPGLKGPPGLLGRKGIKGDQGDRG
DRGPTARGPKGEPGAPGLPGVPGRPAYGKDGRDGERGPRGIPGITGVPGLPGTPGLNGYC
ESSQCILPMVPSTDPPKDSGMKGPSEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccaggatctgtcgggagtctttgctggtgctttttctgcaaattgtgctg
atttgctcggctcagaggggcccagttggccccagaggtcccgcaggaccgcccggggta
gccggtgtgcccggagtggatggcatcgatggtgacagaggcgaagactccacagtgaat
ggtggaccaggccttgacggagataatggcaaagacggggcttctggagcttcaggcctt
ccaggggcagatggacctgttggacctcctggggatccaggcccagtgggcctaaaaggg
ccaaaaggtgagctcggagctcgtggccctactggagagcctggtgtgggacctgacggg
cttgatggtattcctggtacagatgggcttccaggtgaactgggtaaagtcggaccccct
ggagcgagaggcagaagaggtcaagttggtcctcctggtgctgctggttctcggggacct
ccagctgtttatcaaggcgaggacctgtgtcccaatgcctgtccctcaggtctgcatgga
cattctggtctcccaggcatgaaaggccacaaaggggttaagggtgagtcaggtgagccc
ggaagacaaggacacaagggagaagagggtgaacaaggaatgtctggtgaagttggagct
caaggactaccaggcccaggtggagcaagaggcctcgcaggaataatcggtgccaaaggt
gacaggggacctcgtggaaagcctggtgatttgggccctcaaggaatccttggaggtcca
ggtgatgcaggccaaagaggagccattggtgagattgggccacggggagtgctgggagac
caaggtccatcaggaatcagaggagtgccagggccaaaaggagaaccgggccttcctggt
ccagatggccgtgagggaatacccgggctgccagggtccaagggtcttccaggaaaaaat
ggggctccaggtgatgctggtccacagggacttccgggtttgccaggtgcttatggccaa
aaaggacacggcggttcaatgggtaacaaaggggatccaggaggtgtaggactgatgggg
tttccagggaaacagggcgagcgtggtgaacagggagaggtgggacctgttggacccaga
ggaggaccaggtgaacgaggagtgagaggacacgatgggcctgcaggattaccaggagcc
aggggaagcgaaggggatccaggccttccaggacttcctggccctgccggttatcgtggc
ctgaagggagacagaggtgcagttggtcttgatggtccaaaaggagaccagggatctgta
ggagctgaaggaacaccaggagaaggaggagagttgggtgatcaaggagaaccaggagag
aaaggatcgtcaggaccaccaggtgagacaggaaataaaggacctgagggtggcagagga
cagcaggggaaagagggcaaggcgggccaactaggaccacgaggcatgcagggcgatatg
ggggtgccaggcttgccgggaacgcagggaccagcgggaaaaacaccaacagatacacac
atcaaacaggtctgcatgagggtaatgcaagagcagttggcccagctagcagccagcctg
agcaggcctgagtcaggtatttccgggcttcccggccctcctggcccacctggacctcca
ggcgtctctggagagaatggtttccctggccacacaggatcacgaggactgcctggtttg
aagggtccacctgggctactaggtcgtaaaggaatcaaaggtgaccagggtgacagaggg
gacagaggacccacagcgagaggacccaaaggagaacctggtgcccctggtctaccaggt
gtccccggacgtccggcttatggcaaagatggccgtgatggagagaggggacctcgcggt
attcccggtatcactggtgttcctgggcttccaggtacacccggtctaaatggttactgt
gagtcatcacagtgcatcctacccatggtgccatcgacggatccaccaaaggattccggc
atgaagggccccagtgagatgtga
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