Brachyistius frenatus (kelp perch): 138617640
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Entry
138617640 CDS
T10614
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138617640 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138617640
NCBI-ProteinID:
XP_069548890
LinkDB
All DBs
Position
Unknown
AA seq
1763 aa
AA seq
DB search
MDELTREMDFSGERVVTETITSTTRLASLPPKGTSGSNHRNMSSSAGGLGLEKNVLTQNS
SGTYFSSSSVGVNTGGYSSSSGIYLGGDSSGGGEGGGSYLNGEGYRGGGKGGGGGGGSYL
VSSVSKVRSSSSGGARRVQTAGSSGGLSPAFRERKTISSHSGGYDGSSSANSSPEFTRKD
YGNYCSGSTRGRSESRESEIRARLQSASPTACRWTELDDVKKLLKGRSTSVSPTRSSNAS
VTLPVPKKATVQTKTISTASQSVSTSYGSGVRSGAFNTIDISSLYDTSLTSGQVDTGVRS
GQYDASLKSGQYDTGLRSGQYDTGLRSGQYDITLKSGQYDTGVKSSQYDASLKSGQYDSS
LKSGQYDTGVRSGQYDTLDAALPSLSWSTTTLPSSSTTVVAGNTSSYTYQAGQAGTNNMS
GGSSLLNPISPPSLSVYGFQNNLAPASGSVLTTSGANVNANLGVTGYGVQKNVSNGGAVI
STGVSSTTRSQTDDAFKRDYKFLVLEKENAPVRRDTELLILAKDSGKQFTTNSSVHVGGS
LSGDSIKKEKLISSYSETAPLKTETANSYYGSSGVVMKDKATYAEIRRDSGVFGGGGFCC
CSDSCCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVTTLEAESSVASARTSYG
VGAGGGGVAAGVGAGRGAGGGGAVAGVGAGGGAGGGGVVAGVGAGGGAGGGGVAAGVGAG
GGAGGGAGGGGVATRGGAESGSVATRVGAEGGGVATRGGAGGGGVVTGVSDAALRIVIQN
MLRTEMQSQEFKVHGERGLPGPKGDTGSKGDHGFPGTPGAPGAIGHAGPEGPKGQKGTQG
DHGLDGQPGIRGHEGPSGPRGEPGPSGFGMKGSHGDPGIPGSVGAAGAPGPKGDQGLSGP
LGHPGSQGFRGEAGPPGSKGDRGLAGFQGLKGETGDKGSRGLPGDSGIPGPPGSGGEKGS
KGSMGPHGQEGAKGSRGEQGPAGPPGIRGAAGPPGDAALPGTPGLQGPPGMPGNPGQPGA
KGETGSAGRIIDSTGSTSIGIPGPPGPAGPSGPAGPPGLSGPIGPAGLPGQAGPKGDRGY
KGEQGEAGITVRTSESTSTTAERHSAASALPGPPGPPGPPGRPGDSRQGPPGPPGPAGQP
GYGRPGPKGDRGESGLTSSSGTFYSGPPGPPGPSGPKGSSGSPGLRGYQGEPGLPGQPGT
PGRPGDSDRVSTHFGGHAIPGPPGPPGPRGHPGPQGFKGETGTPGTPGLSRGSVSVSSGL
PGPPGPAGPPGQPGSFSSSVEMRQYITDYLGRISQSGIPGPPGIPGPPGIPGTFSGSLED
ISSRIIAYLRRSDSGFSFGGQGPPGPAGPPGPASGSLSVTALISMLQRDDVRRYMSGPPG
PQGPPGPPGTSGGLSGHYRVEDVATYVFNIMNERGIARGPPGPRGPAGPTGPSGGGRSDS
SVATIDYSVLMRTPAFQSWLSSTVQQGRPGSPGSPGARGLPGPPGPQGPAGGSSATVYGG
RGQGYSMEDIQRYLQGSGFRGLQGPPGPPGPQGPPGGHSGSVSFGGNLHRESIRTEIQQY
LSSDNVRRAIVGPPGSPGPRGLKGERGEPGNIQSYTQSQSYSQGDARYASGRADIDVSKL
TEVLDYSNVAMKVTDYIKNRGLLQDYLGEAHFKANVRAIQGPPGPPGPPGPVGYSRVIGS
YGNVTSDLMEFFRTYGTIPGPPGGPGPKGDRGYPGPRGEKGDSGPQGLIGIPGTYAIQIP
SRLQKRDTAAAGSKVAGRQQGRR
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaagggagatggacttctcgggagaaagggttgtgacagaaaccata
acctccacaaccagactggcttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcagtgctggagggctgggcttggagaagaatgtcttaacccagaacagc
agtggaacttacttctcttcatcctctgtaggtgtgaacaccggtggctacagctcctcc
tcaggaatctacctcggaggagactcctcaggaggaggcgagggtggagggagctactta
aatggagaagggtacagaggtggaggaaagggaggaggaggaggaggaggcagttatctc
gtgagctctgtgtcaaaggtcaggtccagctcttcgggtggtgccaggagagtgcagact
gctggctcatcaggaggcctgtcgccagctttccgggagaggaagaccatatccagccac
tcaggaggttatgatgggagttccagtgctaattcctctccagaatttacacgcaaagat
tatggaaactattgctctggcagcacaagagggaggagcgaaagcagagagagcgagatc
agagccagattgcaaagtgcctcccccactgcctgcagatggacggagctggatgatgtt
aagaagctgctgaagggacgctccaccagcgtcagccccacccgctcctccaacgcctcc
gtcaccctgcctgtccctaagaaagccacggtgcagaccaagaccatctcaacagcatct
cagtcagtttcaacttcctatggctctggtgtgagatcaggcgccttcaacaccattgat
atatcaagcctgtatgataccagtctgacatctgggcaggttgacactggcgtccgatca
ggccagtatgatgcgagtctgaaatcgggacagtatgatactggtctgaggtcgggacag
tatgatactggtctgaggtcgggacagtatgatatcactctgaaatcagggcagtatgat
actggtgtcaaatcgagccagtacgatgcgagtctgaaatcgggacagtatgatagcagt
ctgaaatcagggcagtatgatactggtgtgagatcagggcagtatgacacgctggacgct
gcccttccctcgctttcttggtccactaccacgctgccctcctcctccaccacggtcgtc
gctggcaacaccagcagctacacgtaccaggccggccaggccggcaccaacaacatgtcg
ggaggctcgtcactgctcaaccctatctcacccccgtccctgtcagtttacggctttcag
aataatctggctcccgcctctggcagcgtgctcaccaccagtggcgccaacgtgaatgca
aacctcggggttacaggatatggcgttcagaagaacgtgtcaaatggcggcgccgtcatc
agcactggagtttcttcaaccaccagatcccaaactgatgatgcctttaagagagactac
aagttcctggtcttagaaaaagagaatgctccagtgaggagggacacagaactgctcatt
ttggcaaaagacagcggaaagcagttcaccaccaacagcagcgttcatgtaggagggtca
ctgtcaggagattcaataaagaaggagaagcttatatcaagctacagtgagacggcccca
ttgaagacagagacggccaactcttactatggatcctctggagttgtaatgaaagacaaa
gccacctacgcagagattcgcagggacagcggcgtcttcggaggcggaggattctgctgc
tgctctgactcgtgctgctcctggtggaagtggctgctgggactcctcctcctctccctg
ctcctgctgggactcctgtttggcctcattgcactggctgaggacgtgaggaagctgaag
aaccgagtgacgaccctggaggctgagtcttcggtcgcctctgctcgcaccagttatgga
gtcggtgctggaggtggcggtgtagctgctggagtcggtgctggacgtggcgctggaggt
ggcggtgcagttgctggagtcggtgctggaggtggcgctggaggtggcggtgtagtcgct
ggagtcggtgctggaggtggcgctggaggtggcggtgtagccgctggagtcggtgctgga
ggtggcgctggaggtggtgctggaggtggcggtgtggctactcgaggcggtgctgaaagt
ggcagtgtagctactagagtcggtgctgaaggtggcggtgtagctactagaggcggtgct
ggaggtggcggtgtagttactggagtcagtgatgctgctcttcggattgtcatccagaac
atgttaagaactgaaatgcagtcacaagaattcaaagtgcatggagagagaggactgcct
gggcctaaaggggacactggatccaaaggagatcatggtttccctggaactccaggtgct
ccaggcgcgattggacatgcaggccctgagggtccgaaaggacagaaaggaacccaaggt
gatcacggactggatgggcagccaggtatcagaggtcatgagggtccttctgggcccaga
ggtgaaccaggaccatcgggcttcggcatgaaaggttctcacggagatcctgggattcct
ggttctgtgggagctgccggcgcccccggacccaaaggcgatcagggactttctgggcca
ctaggtcatccaggttctcagggtttccgcggcgaggcggggccacctggatctaaaggt
gacagaggacttgctggatttcaaggacttaaaggtgaaactggtgacaagggttccaga
ggtctgccaggtgattctggtattccaggcccgccagggtcaggtggagaaaaaggctcc
aaaggatccatgggaccccatggacaagagggtgcaaaaggatcaaggggtgaacaagga
cctgccgggcctcctggaatcagaggtgctgctgggcctcctggagatgctgcacttcca
ggaacacctgggcttcaaggaccaccaggaatgccagggaacccggggcaacccggtgct
aaaggtgaaaccggctcagcagggagaatcatcgactcaactggctccacttctattggc
atcccaggaccgcccgggcccgccggtccttccggccctgcgggacctccaggattatca
ggtcccattggtcctgctggtctgcctggccaggctggtcctaaaggagacaggggatac
aagggagagcagggagaagcgggaataacagtgagaacgagtgagagcacgtcgaccaca
gcagagaggcactccgcagcctcggcactgcctggaccacctggtccccccgggcctccc
ggacgtccaggagattcaagacaaggacccccaggaccgcccgggcccgcgggccagcca
ggttacgggagaccaggacctaaaggagacagaggagaatcaggcttgacatccagctct
ggaacattttattccggacctccaggaccacccgggccttcagggcccaaaggatcatca
ggttctcccggactgagaggataccaaggtgaaccgggcctgccaggtcaacccgggact
ccggggaggccaggggactcggacagagtgtcgacacatttcggaggacacgcgatcccc
ggaccgccgggtccgccggggcctcggggacatccaggaccgcagggattcaaaggggaa
accggaactcccgggacaccaggcttatcaagaggctcggtctcggtctcttcaggttta
cctggtccaccgggtcctgccggccctccaggccagccaggctccttttcttcttctgtc
gagatgcgccagtacatcactgactatcttggcagaataagccagtctggtatccctgga
cctccaggtatacccgggcctccaggaatccctggaaccttctcaggctctttggaggac
atctcgtctcgtatcattgcatacctgcgacgttcagactcggggttcagctttggtggt
cagggtcctccgggaccagctggtcctcctggacctgcctctggatccctgtcagtcact
gctctcatcagcatgctgcagagagacgacgtgaggagatatatgtcaggaccgccaggt
ccacagggaccaccgggaccaccggggacatcaggaggactttcgggccattacagagtg
gaggatgtcgccacgtacgtcttcaatatcatgaatgaaagaggaattgccaggggtcca
cccgggccacgcgggcccgctgggcctaccgggccttctggcggtggacgctccgactcc
agcgtggctacgatcgactactccgtactgatgagaactccagccttccaatcgtggctc
agttctacggtgcaacaaggacgtcccggttctccaggttccccgggtgcccgggggctc
ccgggcccgccaggccctcaggggccagcaggaggctcctcagccactgtgtacggaggg
agaggtcagggttacagcatggaggacattcagcgttatctgcagggttctgggttcaga
ggtctacaaggtcctcccggacctccgggtccacagggaccgccgggcggtcactctgga
tcagtctccttcggcggaaacctccatcgcgagagcatccgcaccgaaattcagcagtat
ctgtccagtgacaatgttcgtcgcgccatcgtcggacctccggggtctccgggtccgagg
ggcctgaagggagaacgaggagagccaggcaacatccagagctacacccagagccaaagc
tactcccagggcgacgctcgctacgcctccgggcgcgcggacatcgatgtcagcaagctc
acggaggtcctggactactccaacgtcgccatgaaggttaccgactacatcaagaatcga
ggcctgctgcaggactatctgggcgaggcccacttcaaggcgaacgtacgagccattcag
ggcccgcccggcccgcccggccctccgggaccagttggctacagtcgcgtcatcggttcc
tacggcaacgtcacatctgacctcatggagttcttcagaacttacggcaccatcccggga
ccgccgggaggccccggacccaagggagacagagggtacccgggacccagaggagagaag
ggtgattccggaccccaaggtttaatcggaataccgggaacatacgcgatccaaattcca
tccagactgcagaagagggatacagccgctgcaggcagtaaagtggccggtcgtcagcag
ggtcgccgttaa
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