Brachyistius frenatus (kelp perch): 138618601
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Entry
138618601 CDS
T10614
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03008
Ribosome biogenesis in eukaryotes
bfre03013
Nucleocytoplasmic transport
bfre03015
mRNA surveillance pathway
bfre05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138618601 (nxf1a)
03015 mRNA surveillance pathway
138618601 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
138618601 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
138618601 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138618601 (nxf1a)
03009 Ribosome biogenesis [BR:
bfre03009
]
138618601 (nxf1a)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
138618601 (nxf1a)
mRNA cycle factors
Stress granule specific factors
138618601 (nxf1a)
Ribosome biogenesis [BR:
bfre03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
138618601 (nxf1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
RRM_NXF1-2
LRR_9
UBA_8
Citrulline_exp
DUF8346
LRR_TMOD-LMOD
LRR_SKP2
Motif
Other DBs
NCBI-GeneID:
138618601
NCBI-ProteinID:
XP_069550554
LinkDB
All DBs
Position
Unknown
AA seq
673 aa
AA seq
DB search
MDRVAVFQRSYPNLAVVTHVFNSDRGDLMVKREVRSTEFMVQGEHDDRTAPQFRNRKGRG
SHKGRYDRSRRDRQRGSHSGGFGGPGPRSRLEDTEGDVTMSDSSQDNSSQHRFNPYPRAP
RKGDGRFDRDRRQGKGGGGGRGGGGNGGFRGGDRGGGGGIGIGGGKNRSGWYKVTIPHGR
KYEKKWLLTALQNICSVPYSPVQYHVDHNRVHFFVDDSSAANALHKCSHKITDSDGYKVE
VHVNNSAPPSFLLADLKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSQNIEVILN
RKTNMEAVIKVIEENIPELTCLNLSNNRIHKLDELTELVTKVPNLKTLNLSHNELKSDRE
LDKVKGLKLVELWLNRNPLCDLFKDQSSYISAVRQRFPRLLKLDGHDLPAPIGFDVETPT
TIPPCKGSCFGSDEIKVLILRFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPS
RSSLGEYHKDSRNLKRIKDSTIRFRLLKHTRLNVVAFLNELPKTQHDIASFTIDVNTYTN
TLLSFTVSGVFKEVVVDGKTRESTMAFSRVFVTVPAGNSGLCIVNDQLFIRMATTEEIRR
AFVAPAPTPSSSPVPTLTAPQQEMLTAFSQKSCMNLEWSQKCLQDNEWDFNRAAQIFTQL
KTEGKIPDVAFIK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcgtggctgtttttcagagaagctatcccaacctagctgtggtgacacacgtg
ttcaatagcgaccgaggagacctcatggtgaagagagaggtcagaagcactgaattcatg
gtccaaggagagcatgatgacagaactgcaccgcagtttcgcaaccgtaaaggtagaggc
tcccacaagggacggtacgacaggtcccgcagagaccgtcaacggggaagccactcggga
gggtttggaggtcctggaccacggtccaggcttgaagatactgaaggagatgtgactatg
agtgacagctctcaggacaacagctcccagcacagattcaacccctatccaagagctccg
cggaaaggagatggacggtttgacagagacaggcgacaaggcaaagggggaggtggcggg
agaggaggaggaggcaacggcggcttcagaggaggagaccgaggtggtggaggaggcata
ggtatcggaggagggaaaaaccgatctggctggtacaaagtgacgataccacacggaaga
aaatatgagaagaaatggttattgacagctctccagaacatctgttcagttccttactca
cctgtacagtaccatgttgaccacaacagggtccatttctttgtggatgattcctctgct
gccaatgcattgcacaaatgttctcacaagatcacagactcggatggttataaggtggaa
gtgcatgtcaacaacagtgctccaccgtccttcctgctggctgacctgaagcctgaacac
ttggagcacctaaagcaatgcatggcaaaacgtttcgatggctcccagcaagcactggac
ttaaacaacatccgaacagacccagacctggtctcccagaacatcgaagtcattttgaac
aggaagacaaacatggaagctgtcatcaaagtcattgaagaaaacattcctgagctgacc
tgcttgaacctaagtaacaaccgtattcacaaactggatgaactcactgaattggttacc
aaggtgcctaacctgaagacactcaacctttcccacaatgagctgaagtcggaccgggag
ctggacaaggttaaaggcctgaagctggtggagctgtggctgaacaggaaccctctgtgt
gacctcttcaaggaccagtcgtcatacatcagtgctgtgcggcagaggtttcccagactt
ctcaaactggatggtcatgacctccctgcgcccattggattcgatgtggaaacgcccacc
actatccctccctgcaagggaagctgctttggctctgatgaaatcaaggttctcattctt
cgattccttcaacagtactacagtatatatgactcgggggacagacagccactattggac
gcttaccatgatggagcatcgttatccctcacaacgccttactccacccagaacccctcc
aggagcagtcttggagagtatcacaaagacagtcgaaacctgaagaggatcaaagactct
acgattcgctttcgactgctgaaacacacacgactcaatgttgtggctttcctcaacgag
ctgccaaaaactcagcacgacatcgcctcgtttacaatcgatgtgaacacctacacgaac
acactactatcattcacagtgagcggagtttttaaagaagttgttgttgatggtaaaacc
agagaatccacaatggccttctctcgagtttttgtcacagtcccagctggaaattctggt
ttgtgcatcgtcaacgaccagcttttcatccggatggccactacagaggagatccgccgt
gcctttgttgctcctgctccgactccatcttccagccccgtgcccaccctcactgcacca
cagcaagagatgctcacagccttctcacagaagtcgtgcatgaacctggaatggtcacaa
aagtgtctgcaagacaatgagtgggattttaacagagccgcacagatcttcactcagttg
aagacggaaggcaagatccctgatgtagcgttcataaaatag
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integrated database retrieval system
