Brachyistius frenatus (kelp perch): 138619377
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Entry
138619377 CDS
T10614
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138619377 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138619377 (cnot3a)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138619377 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138619377 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
138619377
NCBI-ProteinID:
XP_069551901
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNLEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPVVPTSSSLIGSFSSAVQQHQHQP
AQMQQQSQPPNQSQQQQQQPPQTKPSVPSNNTPSPPSNPLLPASSTPSLPTPSTPSSSAP
NSQSQPISGPTPVSSLGLGLGLGLSKGGMSGTSSANQMPGLGLGGHPTPLNTMAGLISGS
TPAPYAQAAASGGLGLSSTTQSSISVDSITSIPTSGSSGVTTNGAGTGLGLLGSSPAHSS
LSGGILGLVPGQSGTSGTSQVPPSSVSTTAGVVGMMGGNGGNVGVVGGVGVNAAPARPPS
GLKQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPPS
SPSPSFSDSTPGGGSLLNGPHSYTQASEGLKAPEPLSSLKAMAERAALGSSLDGEIPNLH
LTDRGRNDIFSGSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESA
WTHMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGT
KAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFT
FEYRYLEDRDLQ
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggcgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagagcaatttgaagatatctggcaaaagcttcacaatgcagccaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagataaaaaaactacagcgattgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagttgagaac
cgcaaacttatagaaacgcaaatggagcggttcaaggtggtggaacgtgaaacgaaaaca
aaagcctactctaaagaaggcttggggctcgctcagaaagtggatccggctcagagggaa
aaggaggaaacggggcagtggctaacaaatacgatagacactctaaatatgcaggtggat
cagtttgaaagtgaagtggaatctctttcagttcagacgcgaaaaaagaaaggcgataaa
gagaagcaagatcgtattgaggagctcaagcggctgattgagaggcatcgattccacatt
cgcatgttggagaccattttacgaatgctggacaatgactctgtgccagtggatgcaatc
caaaagatcaaggatgatgttgaatattacatcgattcctcccaagacccagactttgag
gagaatgagttcctgtacgacgacttagacctggaagacatccctgcagcgttagttgct
acttctccatcaggtcagggcaatttggaagatgagatgtatctccactctagcagcact
cccacttccaccacctcttcttcgcccatccctccatcaccggcaacttgcactgctgag
aactcagaggacgataagaaaaggggacgatcgacagacagtgaagtcagtcagtcaccc
gtgaagaacggcaccccatctttgctatcttccttctcgtcctccaccacctcggggtcc
tcctcatcctcctcccttgtctccatggcaagtgttgttggaggcattcctgttgttccc
acgagcagcagtcttatagggagcttcagcagtgcggtgcagcaacatcagcatcaacct
gcgcaaatgcagcaacaatctcagccaccgaaccagtcgcagcagcaacaacagcagcca
cctcagacaaaaccttctgtcccctcaaacaacaccccgagcccgcccagcaaccctctc
ctccctgcctcctccaccccctctctcccgacacccagcacacccagttcatcagctccc
aactctcagtctcagcccatatctgggcccaccccggtatccagtttgggactcgggctg
gggctgggactgagcaaaggtggcatgtcggggaccagcagtgccaaccaaatgccagga
ttgggcctaggtggccaccccactcctctaaacacaatggcagggctcatctcagggtcc
acacctgccccttacgctcaggcagcagcatcgggaggcttgggtttgagcagcaccact
cagtccagcatttcagtggacagcatcacttccatccccacctctggctccagtggagtc
accaccaacggggcggggaccgggctcggtttgctcggttccagcccggcccacagctcc
ctgagtgggggcattctgggtctggttcctgggcaaagcggtacctccggtacctctcag
gtgccgccaagttctgtcagcacgaccgctggtgttgttggcatgatgggaggcaacgga
ggaaacgttggtgtggtcggaggagtgggagtgaatgctgctcccgcgagaccaccaagt
ggactgaagcaaaatggaagcacaagttacagtgctgtggtggctgagagctccacagaa
tcagctctgagcacaccgagccagtcacagagcagccagccttcatctctcagctcctca
accagtcagccgatggacaacggtcccagtttaatcagctccatcaccttgcctcccagc
tctccgtccccctcgttctcagacagcacacccggcggagggagtctcctcaacgggccc
cactcctacacgcaggcctccgagggcctcaaggctcctgaacctctcagttctctgaag
gcgatggctgagagagcagcgctgggatcaagcctggatggagagattcccaacctgcat
ctaacggacagaggtcggaacgatatcttctctggttcatctgcagcgcccggcacaccc
gccgcccctcagccgtccgtgtcggaggtcagcatccccccctcgctcggggtctgtccg
ctgggcccaacccctctccccaaagaccagctctaccagcaggcaatgcaagagtctgca
tggacacacatgccgcacccctccgactcggagaggatcaggcaatacctgatgaggaac
ccgtgtccgactttgcccttccaccatcagataccaccacaccactcggactccatagag
ttctaccagagactgtccacagaaactctctttttcatcttctactacctggagggcacc
aaggctcagtatctatctgccaaggctctgaagaaacagtcgtggaggtttcacaccaag
tacatgatgtggttccagaggcacgaggagcccaagacgatcaccgatgagtttgaacag
ggcacttacatttactttgactatgagaaatggggccagaggaagaaggaggggtttacc
tttgagtacaggtacctcgaagacagagatctgcagtga
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