Brachyistius frenatus (kelp perch): 138620183
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Entry
138620183 CDS
T10614
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138620183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfre03041
]
138620183
03009 Ribosome biogenesis [BR:
bfre03009
]
138620183
Enzymes [BR:
bfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138620183
Spliceosome [BR:
bfre03041
]
Complex A
U1 snRNP components
U1 related factors
138620183
Complex B
138620183
Ribosome biogenesis [BR:
bfre03009
]
Eukaryotic type
Pre-60S particles
Helicases
138620183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
138620183
NCBI-ProteinID:
XP_069553259
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGNRSGPPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHPDATRRPIQDVELYRRTKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNWT
EPTPIQGQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGSGPKSTFGGNKAQNG
GGYGGNSGNSSGSYGNNNYSNSNGQGNFGGAPANQVGAFGNQSFQGPPQFGAMQRAAQNG
MNHPPFPFSSQPPPPQVQQPPPPPPMVPYPMPPPFPQ
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggttttcggacagggatcgtggcagagatagagggtatggcggtggaccccct
cgttttggtggtggtggtggaggaggcaacaggagcggacctcctccaggcaagtttggg
aaccccggtgagaggctgagaaagaagcactggaacctcgacgagcttccgaagtttcag
aaaaacttctaccaggaacacccagatgccacccgcagaccaattcaagacgttgagctg
taccgaagaaccaaagaagttactgtcaaaggcagagactgccccaaaccaattgtaaag
ttccatgaagctgcatttccaagctacgtcatggatgttattgtcaaacagaattggaca
gagccaactccaatccagggtcaggggtggcctgttgccctgagtggcaaagacatggtt
ggcatcgctcaaaccgggtctgggaaaaccctcgcataccttctgcctgcaattgtgcac
atccaacatcagccattcttggagcatggagatggtccaatttgcttggtgctggcacca
acccgtgagctggcccagcaggtgcaacaagtggctgctgaatacggcagggcctcccgt
ctcaagaccacctgtatttacggcggtgcaccgaaaggacctcaaatcagggaccttgag
agaggtgttgagatttgcatcgctaccccaggtcgtctcattgatttcctcgagtgtggt
aagactaatttgcgtcgttgcacctatctggttctggatgaagctgaccgcatgctggac
atgggatttgaacctcagatccgcaagatagtggaacaaattcggccagaccgtcagacc
ctgatgtggagtgccacctggcctaaggaagttcgtcagctggctgaagacttcctgaaa
gactacgtccagatcaatattggagcactgcagctcagtgccaatcacaacatcctgcag
atagttgatgtttgcaatgacatggagaaggaggacaaactgatccgtttgctggaggag
atcatgagtgaaaaggaaaacaagaccattatttttgtggaaaccaaaagacgttgtgat
gagctcaccaggaggatgagaagagatgggtggccagcaatgggaatccacggagacaag
agccagcaggagagggactgggtccttaatgagttcagatatggcaaagctcccattctt
attgctacagatgtggcgtcccgtggcttagatgtggaggatgtcaaatttgtcatcaat
tatgactaccctaactcctccgaggattatatccaccgcattggacgcactgcccgaagt
caaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgac
ctgatctctgtgctccgtgaggccaaccaggccattaaccccaagctgatccagatggca
gaggacagaggaggtcgtggacgggggggaagaggtggctacaaggatgaccgccgggat
aggtattctgggggtgggaggagtaactttggtggaagtagctacagggacagggacagt
gatagagggtttggcagcgggccaaagagtacctttggtggcaacaaggcccaaaatggt
ggcggctatggaggtaacagtggtaactctagtggtagctatggcaacaacaactacagc
aacagcaacggacagggtaattttggtggtgcaccagcgaaccaggtgggtgcctttggt
aaccaaagtttccaggggcccccgcagttcggggccatgcagagggccgctcagaatgga
atgaaccacccgccgttccctttcagctctcagccaccaccaccacaggtccaacagcca
ccacccccaccaccgatggtgccctaccccatgccaccacccttcccacagtag
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