Brachyistius frenatus (kelp perch): 138620345
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Entry
138620345 CDS
T10614
Symbol
rfc1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03030
DNA replication
bfre03410
Base excision repair
bfre03420
Nucleotide excision repair
bfre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138620345 (rfc1)
03410 Base excision repair
138620345 (rfc1)
03420 Nucleotide excision repair
138620345 (rfc1)
03430 Mismatch repair
138620345 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfre03032
]
138620345 (rfc1)
03400 DNA repair and recombination proteins [BR:
bfre03400
]
138620345 (rfc1)
DNA replication proteins [BR:
bfre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138620345 (rfc1)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138620345 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_17
AAA_5
RuvB_N
Rad17
AAA_14
nSTAND3
AAA_33
AAA_7
AAA_16
BRCT_2
AAA_18
RNA_helicase
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
138620345
NCBI-ProteinID:
XP_069553586
LinkDB
All DBs
Position
Unknown
AA seq
1201 aa
AA seq
DB search
MDIRRFFAPTAAKPAVQKPAPDRNIKPEEEEEEKKKKKKXKQQPLSSDEEVKKKETTKVK
SSKTEQHKDSERKRKKHAVIASDSDEEEKEQPGRKTKKPLKEKRKTTKAEPPPKKDPVQY
VSETDSDSDTFQTLKTKPKQNGFGKTTKSDAGVREGTVKSPVRPSSSSSQGKAGAKSPPA
PATPKSAPPPQPKQTPTSLLDYFGSGTIQRSDKKLVASTKRKASSQDIDDLISDEEIARQ
LQMEEDMELEKQVHEDEEFARTLAMLDKEPKAKKACKDSNEKQSLSTTSEKSSADAAACS
TSSLSRTTRSTSEDVISSSPKKDTAPVKTSSKLALLKKKNEARDEWPKSKTPTSPTKMKI
SPKKEPVASPISYKKLTPKTGTTPTALKTSPKKPESTSTSPDDSEKKRINTSAYRNFLNR
DGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNISKKTSYL
VQGRDSGVSKLEKAESFGTTILDEDGLLELVRTKPGKKSKYEIAAEAENKALKTRTAPSK
TSKITPKAQKISPSKGNSTSPRTPSPSKTGLARGHAARRSGNGSTPPGRGCGHTARRELG
LSSSSSSASSAPGPSSPSLTGDGASLLWVDKYRPRSLKTVIGQQGEQSCANKLLRWLQNW
YKHHSGGAEKPAAARFGKFGGGGGGGGGRDDGSGHKAALLSGPPGVGKTTTAALVCEELG
FSYVEMNASCTRSKNSLKEVVAESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNED
RGGIQEMIGLIKSSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFK
EGIKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDTKLGPFD
VCRRVFTSGEQTAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAARGDMKSHLVLLSK
TADSISDGDLVDRRIRSRQNWSLLPTQAIYASVLPGELMRGYMAQFPVFPSWLGKHSSAS
KHSRIVQELNSHMSLKTTSGRQAVNLDYLHYLRQALLSPLQRRGAQGAAQAVQLLDDYQL
VKEDVDSIMEISVWGGQPDPYSKLDPKVKAAFTRAYNKEVHLTPYSLPAVKKGRRGGGGE
SEMGGGEDAGQDGQESEDEGDGLKVDAMIKQKKVKATKESNQEKKEGSGKDKGKGKGKAK
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgactgcagccaaacctgcggtgcagaaaccagcc
ccggatagaaacatcaaaccagaggaggaggaggaggagaagaagaagaagaagaagnnc
aagcagcagcctctgtcttcagacgaggaggtgaaaaagaaagaaaccaccaaggtaaaa
agctccaaaacagagcaacataaagacagtgagagaaaacgaaagaagcacgcagtcata
gcgtcagactctgatgaggaggagaaggagcagccagggaggaagacaaagaaacccctc
aaagagaaacggaagaccaccaaggcagagccgcctcctaaaaaagatcctgtgcagtat
gtctctgaaacagactcagacagtgacaccttccagacattgaagaccaaacccaagcag
aacggcttcggaaaaacgaccaagtcggacgcaggagtcagagagggtacggtgaagtct
cctgtcaggccctcctcctcctcctcgcaggggaaagctggggcgaagtctccccctgcg
cccgccaccccaaagtcagctccacctcctcagcccaaacaaactcccacctcactcctc
gactacttcggcagcgggaccattcagcgctcagacaagaagctggtagccagcaccaag
cgaaaggcttcgagtcaagacatagacgacctgatcagtgatgaagaaatcgccagacag
ctgcagatggaagaggacatggagctggagaaacaggtccatgaggacgaggagttcgcc
aggacactggccatgctggacaaagagccaaaggcaaagaaggcttgtaaagattccaat
gaaaaacaaagtttaagtacaacgtccgagaagagcagcgcagacgctgctgcctgcagc
acgagcagcctgtcaaggaccactcgaagcacgtcggaggacgtgatcagttcgtctccc
aagaaggacaccgcgcctgtcaaaaccagctccaaactggccttgttgaagaaaaagaac
gaggcgagggacgaatggccgaagagcaaaacacccacttcacccacaaaaatgaaaatc
tctcccaaaaaggagcctgtcgcttcgccgatctcatacaagaagctcacgcccaaaaca
ggaaccacgcccaccgcgctcaaaacctctcccaagaaacccgagagcaccagtacgagt
cctgatgactcggagaagaagaggatcaacacttcagcttacaggaactttctcaacaga
gacgggccgcgagctctgggctccaaggaaatcccacagggagcagagaactgtttggag
ggctgcgtgttcgtgctgacgggcgtcctggagtcgatggagagagacgacgccaaatct
ctgatcgagcgctatggaggaaaggtgacgggcaacatcagcaagaagacgagctacctg
gtgcagggcagagacagcggagtgtccaagctcgagaaggcggagagttttggcaccacg
atcctggatgaagacggtctgttggagctggtcagaaccaaaccaggaaagaagtcgaag
tacgagattgctgcagaagccgagaacaaagccttaaagaccaggactgcccccagcaag
acttcaaagatcacccccaaggcccagaagatctctccctccaagggcaactccacgtcc
ccccgcaccccgagcccgtcaaagaccggcctggcacgaggccacgctgccaggaggagc
gggaatggcagcaccccgccggggagaggctgtggtcacacggcccgcagggagctgggc
ctatcctcctcctcctcctctgcctcttcagccccaggaccctcatctccatccctgaca
ggggacggcgccagcctgctgtgggtggacaagtaccgtccgcgctctctgaagacggtg
atcggccagcagggggagcagagctgtgccaacaagctgctgcgctggctgcagaactgg
tacaaacaccacagcggaggcgccgagaagccagcagctgcgcggttcggtaagttcgga
ggaggaggaggaggaggaggaggaagagatgatggctcaggacacaaagctgctctgctc
tctggacctccgggggtggggaagaccaccacagctgccctggtctgtgaggagttgggc
ttcagctacgtagagatgaacgccagctgcactcgcagcaaaaacagcctaaaggaagtt
gttgctgagtcactcaacaacaccagcatcgagaacttctacaaaggcacgtctcagact
gtgagcagcaaacacgtgctgatcatggacgaggtcgacggcatggctggaaacgaggac
cgcggaggaatccaggagatgatcggtctgatcaaaagttctaagattcccatcatctgc
atgtgcaacgatcgtaaccaccagaagatcaggtcgctggccaactactgcttcgatctg
cgcttccagaggccgcgagtggagcagatcaagggagccatgatgtccctcgccttcaag
gagggaatcaagatcccgccgccggccctgaacgagatcatcctcgcctccaatcaggat
gtccgacaggtgatccacaacctgagcatgtggtcggccaaagacaaggtgatgacttac
gaccagtgcaagtccgacgccgccagcgcccgcaaggacacgaagctcgggccgttcgac
gtgtgcaggagggtgttcacctcgggggagcagacggcccacatgagcctcatcgacaag
tccgacctgtttttccacgactactcgctggcgccgctgttcgtccaggagaactacctg
cacgtccgtccagccgcggcacggggggacatgaagtcccatctggtgctgctcagtaag
acggcggactccatctccgacggagacctggtggacagacggatccgctcgagacaaaac
tggtcgctgctgcccacccaggccatctacgccagtgtgttaccaggggagctcatgaga
ggctacatggctcagttcccagtcttccccagctggctcggcaagcactcctccgccagc
aaacactcccgcatcgtgcaggagctgaactcgcacatgagcttaaagacgacgagcggc
cggcaggcggtgaacctggactacctgcactacctgcggcaggcgctgctgtcgccgctc
cagcggcgcggcgcgcagggcgccgctcaggcggtgcagctgctggacgactaccagctc
gtcaaggaggacgtggacagcatcatggagatcagcgtctggggcggacagcccgacccc
tactccaaactggaccccaaggtgaaggcggctttcacacgggcgtacaacaaagaggtt
cacctgacgccgtactccctgccagctgtgaagaagggccgccgaggtggcggaggggag
tcggagatgggagggggggaggacgcgggccaagacggccaggagtctgaggacgagggc
gacggcctcaaagtcgacgctatgatcaaacagaagaaggtcaaagccaccaaggagtca
aatcaggagaagaaagaaggctctgggaaggacaaaggaaaggggaaaggcaaggcgaag
aaatga
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integrated database retrieval system
