Brachyistius frenatus (kelp perch): 138621073
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Entry
138621073 CDS
T10614
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfre04147
]
138621073 (col18a1a)
00535 Proteoglycans [BR:
bfre00535
]
138621073 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
bfre00536
]
138621073 (col18a1a)
Exosome [BR:
bfre04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138621073 (col18a1a)
Proteoglycans [BR:
bfre00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
138621073 (col18a1a)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138621073 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
138621073
NCBI-ProteinID:
XP_069554947
LinkDB
All DBs
Position
Unknown
AA seq
1436 aa
AA seq
DB search
MATMRTQFGVLFLLAQWVVCSDAWFWSWTGTTTLAPTVDHEGSGSPVFSGEPPSESSATV
GAEIIDEGHGILRVLQTWDEATEAPQLTALLPTTQPESERASEKAASGILARKSKPEDTV
VSLLQLIGDPPPSDITLVFESDTPGYRFGPDANTGQLARAHFPSPFHRDFSLIFNLKPTS
DGGGVIFSVTDASQKIMYVGVKLSAVQGANQNVILYYTEPDSQRSYEAARFLVPSMRDVW
TRFAIAVRDDKVMFYLNCDSDPQVMPMERSPDEMDLEDGAGVFVGQAGGADPEKFLGVIG
ELRVVGDPRAAGRHCEEDEDDSDTASGEGSGVEERRPPKPDAGKFRWTTTPQSSPPIQQP
PLMRKEEVAVSRETGLAGAKGEQGDRGEKGDRGPIGPKGESGPGTSSRGGARGEKGEAGE
TGPKGSAGFGYQGKKGEPGLAGPPGPPGPPGPTAQLAGGGDGSVVSRVPASQGPVGPQGG
PGPRGQPGADGEPGDPGEDGKTGPDGPPGFPGTPGDSGPKGDKGDRGEGQPGPRGPPGPA
GPPGQGFRSTFVDMEGSGFPDVESIRGLPGPPGVPGPPGPPGPSTAGAASSPGAFGPPGK
DGAPGQPGLPGLPGTDGLPGALGARGEKGDSGELGLPGAIGQKGARGDPGLPGTAGEAGL
AGLPGPMGPIGQPGPPGPPGPSYRVGFDDMEGSGGGFTNGLPGVRGPEGIQGPPGLPGLP
GTPGFPGTPGQKGNDGLTGTDGQPGLDGFPGPPGSKGDRGDQGERGEPGQDGTGFQGPPG
PPGPPGQIVYQTSDNFDAVGRAGAQGGPGLPGQAGFPGPIGPKGDNGDPGPPGYGVKGEK
GEPGLVIGPDGNLVHLEGLTGQKGERGPSGPVGPSGQYGPAGIKGEIGMPGRPGRPGVNG
YKGEKGESAGGAGYGYPGVPGQPGPPGPPGPSGPPIPLDRFNRYDETSRNYPAIKGEKGE
HGDRGLPGIPGTASNLDIYALKNEMKGERGDLGVKGEKGEPGGGFYDPRFGGVQGPSGPP
GNPGLPGPKGDSIRGPPGPQGPPGTPGIGYDGRSGPPGPPGPPGPPGSSSLPGAYRPNHS
VSLPGPPGPPGQPGTPGHSSGVTVLRSYDTMIATARRQVEGSLIYIIDKADLYLRVRDGL
RQVMLGEYSPFFRDLENEVAEVQPPPVILYPQSQDQSHNNGAGHYSQGGSAVRPIEPPPQ
PPTDPRYPLQYEPRFPDQRHTGQTDGRLATHHTDNRHPVTPQRRPNPPVPEPAGRVDTSG
SGLHLIALNAPQSGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRD
SSPIVNLKDQVLFRSWESIFGDNSKMRENVPIYSFDGRDILRDSAWPEKMVWHGSSNKGH
RQTDHYCETWRAGDRAVTGLASSLQSGHVLQQSSSSCSGSYVVLCIENALTTPSKK
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggctacgatgaggacccagtttggagttttgtttctgctggcccagtgggtggtctgc
tctgatgcctggttctggtcctggaccggtactacaactttggcccccacagtggaccac
gaggggtccggcagtccagtgttcagtggagaaccgccttcagagagtagcgcaacggtt
ggagcggagatcattgacgaaggacatggcatcctgagggttttgcagacttgggacgag
gctaccgaggctcctcagctgaccgctcttttaccgacaacacaaccagagagcgaacgt
gcgtcagaaaaggccgcttctgggattttggcacgcaaaagtaaacctgaagacactgta
gtctccctgctgcagcttatcggggatcctcctcccagcgacatcaccctggtcttcgaa
tcggacacccccggctaccgcttcggcccggacgccaacacgggccagctggcacgcgcc
cacttcccgagccctttccaccgagacttttccctcatcttcaacctgaaacccacctcc
gacgggggcggggtcatcttctccgtcacggacgcctcgcagaagatcatgtacgtgggc
gtcaaactgtccgccgtgcagggcgccaaccagaacgtcatcttgtactacacggagccc
gactcgcagcgctcctacgaggcggccaggttcctggtgccctccatgagggacgtctgg
acccgtttcgctatcgccgtgagggacgacaaggtgatgttctacctcaactgcgactca
gaccctcaggtgatgcccatggagaggtccccggatgagatggatctggaagacggcgcc
ggggtgtttgtcgggcaagctggaggcgccgatccggagaagttcctgggtgtgatcggg
gagctgagggtggtgggcgacccccgggccgccgggaggcactgcgaggaggacgaggac
gattcggatacggcttcaggggaaggaagcggcgttgaggaaagaagacccccgaaacca
gacgcggggaaattcagatggacgactacccctcaatcatctccgcccattcagcagccg
ccgctgatgaggaaggaggaggtggccgtttccagagagacagggctagccggggctaaa
ggagagcagggcgacagaggagagaaaggagatcggggtccgattgggccgaagggagag
tcgggccctggcaccagctcacggggaggagcaaggggagagaagggagaagccggggaa
acgggaccgaagggcagtgccggctttggctaccaagggaaaaagggagagcctggcctc
gctggaccccccggcccccccggccctccggggcccaccgcacagttagcaggtggtggc
gatggctcagttgtgtcgagagtccccgcatctcagggacccgttggaccacagggtggc
ccaggcccccgggggcaaccgggagccgatggagagccaggtgatcctggtgaagatgga
aaaactggtcctgatggacctccaggtttccccggaacaccaggtgactctggacccaaa
ggagataagggagaccgtggtgagggtcaacccggcccccggggaccgccggggcctgcg
ggaccaccaggacaaggattcagatccacctttgtggacatggagggctcaggattccct
gatgtggaatctattcggggacttcctggcccaccaggcgtgcccggtccccctggtcct
cccggcccctcaacagctggcgcagcatcgagtcccggagcattcggaccaccaggaaag
gatggggcacctggtcaacccggcttgcctggtttaccgggtaccgatggccttccagga
gctctgggcgcgaggggagaaaagggtgattcaggcgagttgggtcttccaggagcaatt
ggacaaaagggagcccgaggagaccctgggttaccaggaactgcaggagaggctggtctg
gctggtctgcctggacccatgggaccaattgggcaacctggtcctcctggtcctccggga
ccgagctaccgtgttggattcgatgacatggagggctcaggtggaggtttcactaatgga
cttcctggcgtcagaggaccagaaggaatacagggtcctcccggcttgcctggacttccg
ggtacaccggggttccctggaactccaggccaaaagggaaatgatggtcttacaggaaca
gatgggcaaccaggcttggacggcttccccggacctccgggttcaaagggtgacagaggt
gaccaaggagagaggggtgaaccaggtcaagatggaaccggcttccaaggtccaccaggt
ccacccggaccgccaggacagatcgtctaccagacatccgacaactttgatgctgttggc
agagctggggcacagggtggccctggtttacccggtcaagctggattccccggtcctatt
ggaccaaaaggtgacaatggagaccccggtcctccaggctatggagtcaagggtgagaaa
ggtgagccaggcttagtaatcggaccagatggaaatcttgtgcatctggaagggctcact
ggtcagaagggagaaagaggaccctcaggacctgttggaccctctggtcagtacgggccg
gctggaataaagggtgaaattggaatgcctggaagacctggtcgccctggtgtaaatgga
tacaagggtgagaaaggagagtcagcgggtggtgcgggctatggctaccctggagtccct
ggccaaccaggaccacctggaccacctggaccctcagggcctcccattcctttagatcgc
ttcaatcgctatgacgaaacttcaaggaattacccagcaattaaaggtgaaaaaggagaa
catggagaccgtgggcttccaggcatcccaggaacagcctctaatttggatatttacgca
ctcaagaatgaaatgaagggggagcgcggagacttgggtgtcaagggagaaaaaggagag
cctggtggtggattttatgacccacgttttggaggagtacaaggcccctcagggccgcct
ggcaacccaggcctaccaggaccaaagggagattctataaggggccctcctggaccccag
ggacctccagggacaccagggattggttacgatgggcgttcaggtcctccgggaccacct
ggacctccaggaccaccggggtcatcctcacttccaggagcatacaggcctaatcactcc
gtcagtctccctggacctcccggtcccccgggccagcctggaactcctggtcactcctct
ggggttacagttttgaggtcatatgacacaatgattgctactgccagacggcaggtagag
ggcagcctcatctacatcatagacaaagcagacctctacctgagagtacgcgatggactg
cggcaagtcatgcttggagagtacagtcccttcttcagagatctggagaatgaggtagca
gaagtccaacctccacctgtgattctgtacccccagtcccaagaccagtcccacaacaac
ggagcgggccattactcccagggtggttctgccgtgcgacccattgagcctccaccgcag
ccacctacagatcccagataccctctacagtatgagcccagattcccagaccagagacac
acgggtcagaccgatgggagattagccacccaccacactgacaacagacaccctgtcact
ccccagcgacgacccaacccacctgtgcccgagcctgctggccgtgtcgacacatcagga
tcaggactacacctcatcgccttgaacgcccctcaatctggcaacatgcgaggcattcgc
ggggcagacttcctgtgcttccagcaggctcgtgctgtgggtctgaagggaaccttcaga
gccttcctgtcctccaagcttcaagacctctacaccatcgtccgcaggtcggaccgggac
agctcccccatcgtgaacctgaaggaccaagtgttgtttcgtagttgggagtctatcttt
ggtgacaacagcaaaatgagggagaatgtacccatctactccttcgatggcagagacatc
ctcagggatagcgcatggcctgagaaaatggtctggcatggatcaagcaacaaaggccac
cggcaaacagaccactactgcgaaacatggcgggcaggtgaccgcgctgtgactggtctg
gcatcatcactacagagcggccacgtcctgcagcaaagctccagcagctgctccggctcc
tacgtcgtcctctgcatcgagaacgccctcacaacaccctccaaaaaataa
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