Brachyistius frenatus (kelp perch): 138621577
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Entry
138621577 CDS
T10614
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138621577 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfre03041
]
138621577 (snrnp200)
Enzymes [BR:
bfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138621577 (snrnp200)
Spliceosome [BR:
bfre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138621577 (snrnp200)
Complex C
U5 SnRNP specific factors
138621577 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
Sigma54_activ_2
DUF603
Motif
Other DBs
NCBI-GeneID:
138621577
NCBI-ProteinID:
XP_069555840
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEADVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERLRKSRVDDLEAMDIDHGESLAPRQLLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLYKTTLETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLADMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRTSDPLLERRRMDLVHTAAN
VLDKNTLIKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEVVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TVTPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGEDGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTHTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLVPFLEKINDSTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYNNIPIRH
HEDALLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTGLLQLSDAQMADVARFCNRYPNIELSYEVAEKDNVKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgctcgtagcctgcagtacgagtacaaagcgaactcaaacttggtg
ttgcaagccgatcgctctctgattgaccgcactcggagggatgaacccaccggagaggtg
ctgtccctggtggggaagctggaagggaccaagatgggggacaaggctcagaggaccaaa
cctcagaagctggaggagagacgagacaagaggcgaaaaagagatgaggacagacacgat
atcaacaaaatgaagggttttacccttttgtctgaaggcattgatgaaatggttggcatt
gtgtacaaacctaaaaccaaagaaaccagagagacatatgaagtgttgctcagcttcatc
catgctgctttgggggatcagccacgtgatattctgtgtggagcagctgatgaagtgtta
gcagtgctgaagaacgacaaaatgagggacaaagaaaggcggcgtgaagtggagcagctt
ctcggacctgccgacgacacgcgctaccacgtgttggtcaatctcggcaagaaaatcaca
gactatggaggcgacaaggacctgcagaatatggatgacaacattgatgaaacatatggt
gtcaatgtccagtttgaatctgatgaggaggaaggggatgaagaccagtttggcgaagta
cgagatgaacactcagacgaagacagtgaaggcgaggaggcagatgtgggctgcgctctt
tcggccaatctcggggcaacgggtgatgtgatgaccgtaaagaaaaaagatttacatccc
agagacatcgacgctttttggctccagcggcagctcagccgtttctatgacgatgccatt
gtctcacaaaagaaagctgatgaggttttagaaatcctcaagactgccagtgatgacaga
gaatgtgagaaccagctggtgttgctgttgggcttcaacacgtttgatttcattaaaatc
ctccgtcaacatcgccgcatgattcagtattgtaccatgctggcgagcgctcagagtgag
gcagaaaaggaacggatcattggaaagatggagtctgatcaggagctgtctaagattctg
taccagctgcaggagacggagaaggaggatattattcgagaagagcgatctcgcagggag
aggttgaggaagtctcgtgttgatgacttggaagcgatggacatcgaccatggagagtct
ctggcccctcgacagctactagacctcgaggacttggccttcactcaggggagccatttc
atggccaacaagcgttgccagctgccagacggctcatttcgcaaacagcgcaaaggttat
gaagaagtccacgtgcctgccctcaaacccaaaccctttggtgatgatgaggtgcttgtt
gccattgagaagttgcccaagtacgcccaggctggatttgaagggttcaaaactctgaat
cgcatccagagcaagctgtacaaaacgaccctggagacagatgagaacctgctcgtgtgt
gcacccacgggagctggtaagaccaacgttgccctgatggcaatgctgagagaaattgga
aagcacataaacatggacggaacaatcaatgtggatgacttcaaaatcatctacatcgca
cccatgcgctcactagtacaggagatggtgggaagttttagtaagcgtttggcgagttat
ggcatcacagtgtctgagctgacaggagaccaccagctctgtaaagaggagatcaacgcc
actcagatcattgtgtgcaccccagagaaatgggacatcatcactcgtaaaggtggagag
cgtacctacacccagttagtgcgcctcatcatcattgatgaaatccacctgttgcacgat
gaccgtggacccgtgttggaatctctagtggcaaggaccatccgcaatgtggagctgacc
caggaggacgtgcgtctgctgggcctcagtgccacactgcccaactatgaagatgtggcg
acctgcctgcgtgtcgatcctgccaagggtctcttctacttcgacaacagtttccgccct
gtgcccctggagcagacttatgttggtatcacagagaagaaggccatcaagcgtttccag
atcatgaatgagattgtgtatgaaaagataatggagcatgctggaaagaaccaggtgctc
gtgtttgtacactccaggaaggagacagggaagacggccagggccataagggacatgtgc
ttggagaaggacactctgggtcttttcctcagagaaggttctgcctccaccgaagtgttg
agaactgaagcagagcagtgcaagaacctggagctgaaggatttgctgccatacggcttc
gcgatccaccacgctggtatgaccagagtcgaccgtacgctggtggaggatttgtttgcc
gatcgacacatccaggttctggtctccacagccactctggcctggggtgtcaatttgccc
gcacatactgtcatcatcaaaggaacccaagtgtacagcccagagaagggcagatggacc
gaactgggagccctggacatattacagatgctcggtcgagccggccgtcctcagtatgac
accaaaggagagggaatcttgatcacatcgcacggagagctgcagtattatctgtccctg
ctcaaccagcagctgcccatcgagagtcagatggtggcaaagctggctgacatgctcaat
gcggagatagttctgggcaacgtgcagaccgtaaaggacgctgtgaactggctcggctac
acctacttgtatgtgcgcatgctgcgcaaccccaccctgtatggcgtttctcatgatgat
cggacttcagaccccctgctggagaggcgcaggatggacctggtgcacacagcagccaac
gtcctggacaagaacacgctcatcaaatatgacaagaggaccggcagcttccaggtcaca
gacctgggacgcatcgccagtcacttctacatcactcacgactcgattcagacctacaac
caactgctgaaacccactctgagtgagatcgaactcttcagagtcttttcactgtcctca
gagttcaggaacattactgtgagagaggaggagaagctggagcttcagaaactgctggaa
agagttcctattcctgtaaaggaaagcatcgaggagccgagtgccaagatcaatgtgctg
ctccaggcgtacatctctcaactcaaactcgaaggctttgccctcatggccgacatggtg
tatgttacgcagagtgctggacggttaatgcgggccatatttgaggttgtgctgaacagg
ggctgggctcagctcacagacaagaccatgaatctctgcaagatgattgacaagagaatg
tggcagtcgatgtctcctctgcgtcagttcaagaagctgccagaggaagtgatcaagaag
attgagaagaaaaacttccccttcgagcgtctctatgacctgaaccacaatgagattggt
gagctgatccgaatgccaaagatgggaaagaccattcacaaatacgtccaccagttcccc
aaactggacctggctgtccatctgcagccgatcactcgctccacactcaaagtggagctc
accgtcacgcctgacttccagtgggatgacaagattcatggatcatctgaagctttctgg
atcctggttgaggatgtggacagtgaggtcatcctccaccacgagtacttcctcctcaaa
gccaagtacgcccaggacgagcacctcgtgactttcttcgtcccggtgttcgagcctctg
ccgccacagtacttcatccgtgtggtctcagaccgatggctctcctgtgagactcagctc
ccggtatccttccgtcacctcatcctaccagagaagtaccctccacccactgagctgctg
gacctgcagccgctgccagtcactgctctcaggaactctgccttcgaggctctctaccag
aacaagttccccttcttcaaccccattcaaacacaagtcttcaacgctgtgtacaacagt
gatgacaacgtgtttgttggcgcgcccaccggaagcggaaagaccatctgtgctgagttt
gccatcctgaggatgctgctgcacaacgcagagggtcgctgtgtgtacatcaccccgatg
gaagcactggctgaacaggtgttcgtcgactggcaccagaagttccaggacatcctgaac
aagaaggtggtgctgctgactggcgagaccagcaccgatctgaagctgttgggaaaaggt
gacatcattgtcagtacccccgacaaatgggacatcctgtctcgtcgctggaaacagagg
aagaacgtccagaacgtcagccttttcattgtggatgaggcgcacctcattggaggagaa
gatgggcctgtgttagaggtcatctgctccaggatgagatacatctcctctcagattgag
cgtcccatccgcatcgtggccctcagctcgtctttgtccaacgccaaagacgtggcccac
tggctgggctgcagcaccacggccacgttcaacttccaccccaacgtcagaccggtgcct
ctggagctgcacatccagggtttcaatgtgagccacacccacacccgcctgctgtccatg
gctaaaccggtgtaccatgccatcatgaagcactctccctccaagccggccgtggtgttc
gtaccatcccgcagacagacccgcctcacggccatcgacatcctcaccttctgtgctgct
gatgtggttcctcagaggttcttgcattgcactgagaaagacttggttccgttcctggag
aaaataaatgattcaactctgaaagagactctggccaacggcgtgggatacctgcatgag
ggcttgtctgcaactgaacgcagaatagtggagcagctcttcaactcaggtgctgttcag
gtggtggtgtcctctcggtcactctgctggggcatcaacatctctgcgcacctcgtcatc
gtcatggacactcagtactacaacggcaaaatccatgcatacgtggactatcccatatat
gatgtcctgcagatggtggggaaggcgaacagacccatgcttgatgatgaaggtcgctgt
gtcatcatgtgtcagggctccaaaaaggacttcttcaagaagttcctgtacgagccgctg
ccagtggagtctcacttggaccactgtctccacgaccacttcaacgctgagatcgtcacc
aagacggtggagaacaagcaggacgccgtggactacctgacgtggacgttcctctaccgc
cgcatgacccagaacccaaactactacaacctgcaaggcatgtcccatcgtcacctgtcc
gaccacctgtcggagctggtggagaacacgctgcatgacctggagcagtccaaatgcatc
agcatagaggatgaaatggatgtagcgccgctcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgcgggttgatcgagatcatttccaacgctgccgagtacaacaacattcccatcaggcac
cacgaggacgctcttctccgacagctggcacagaaagtgccccacaaactgaacaacccc
aagttcaacgacccccacgtcaagacgaacctgctgctgcaagcccatctgtccaggatg
cagctgagcgctgagctccagtctgacaccgaggacatcctgagcaaggcgatccgtctg
atccaggcctgcgtcgacgtgctgtccagtaacggatggctgagccctgccctggctgcc
atggagctcgcccagatggtcacccaggccatgtggtcgaaggactcgtacctcaaacag
ctgcccttcttcacctcggagcacatcaagcgctgcacagacaagggagtggagagtatc
ttcgacatcatggaaatggaggatgaggacagaaccggactgctgcagctctcggacgct
cagatggccgacgtggctcgtttctgtaaccggtacccgaacatcgagctgtcgtacgaa
gtggcagagaaggacaacgtcaagagtggcagtccagttctggttcaggttcagctggag
agagaggaggaggtgactggacccgtcatcgctccactcttcccacagaaacgcgaggag
ggctggtgggtggtgatcggagaccccaagtccaacagcctcatctccatcaagagactg
actctccagcagaaagcaaaggtcaagctggactttgttgcaccagcgatgggcgtccac
aactacaccctgtacttcatgagcgacgcctacatgggttgtgaccaagagtacaagttc
agcgtggatgtgaaggaggccgacagcgacggagacagcgactcggactaa
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integrated database retrieval system
