Brachyistius frenatus (kelp perch): 138621916
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Entry
138621916 CDS
T10614
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03015
mRNA surveillance pathway
bfre03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138621916 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
138621916 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138621916 (cpsf6)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
138621916 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
138621916
NCBI-ProteinID:
XP_069556386
LinkDB
All DBs
Position
Unknown
AA seq
584 aa
AA seq
DB search
MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDALPAPG
GAEGGKSAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGITDVLEIKFYENRAN
GQSKGFALVCVGSEASSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTQSGQM
SGEGKAGPPGAGPRGGFPMGRGRGRFPGPPCPGGDRFPGPVGPGGPPPHFPGPGMRPDLV
RHQDGPLMDMSFNPFPPGGRNGSWRDRGGMQGPPRPPPGPPGPPGPPGPPPPGQGLPPPL
AGPPNRGDRPPPPVLFPGQFGQPPMGPLPPGPPPPGYGPPPGPPPPQQGPPPPGPFPPRP
PGPIGPPMALAPPPHMPGPPPGGPPPAPHVNPAFFPPPGNNNMPPNDSRGPPGPNDPYGR
PPPYERDYGPGGREMEASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIET
LVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASRRERSRERDHSRSREKSR
RHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcatatcgacatctatgccgacgtagaggaagaatttaatcag
gaatctgactatccggttcacgagcagatcgacttgtatgatgatgtaatatcgccatca
gccaataatggggatgctccagaggaccgtgattacctggatgcactgcctgcaccaggt
ggtgcagagggagggaagagtgctccacccaatgtggtgtacacctacacaggaaaaagg
attgccctttatataggaaaccttacatggtggacgacagatgaggacctgacagaagcc
atccggtcgataggcatcacagatgtgctggagatcaagttctatgaaaacagagccaat
ggccagtcaaaagggtttgctctagtatgtgttggctcagaggcatcgtctaggaagcta
atggagctgctgtcaaagcgggagctccatggtcagaatcccattgtcacaccatgcaat
aaacagtctctcagccaatttgagatgcagtcacgtaaaagtacccagtcaggccagatg
tctggggaaggtaaagctggtcctcctggtgctggcccccgtggtggtttccccatgggg
cgaggcagaggcaggttccctggaccaccttgccctggaggagaccgcttcccagggccc
gtagggcccggaggcccaccaccacactttcctggcccggggatgagaccagatctggtt
aggcaccaagatggccctctgatggatatgagtttcaatcccttcccgccggggggcagg
aacgggagctggcgtgacagaggtggcatgcagggtcctccacgtccccctccgggtcca
cctggtccccctggccctccaggccctccacctcctggccagggcctcccccctccccta
gctggtcctccaaatcgtggcgacaggcctcccccccctgttctcttccctggtcagttt
ggccagccaccaatgggacccctacctccaggcccccctccaccaggttacggccctccg
cccggtcccccgcccccgcaacaaggtccaccacctccagggcccttccctcctcgtcca
ccaggccctattggccccccaatggctttggctccaccgccacatatgccaggtccccca
ccaggtggcccaccaccagccccccatgtgaaccccgccttctttcctccacctggcaac
aacaacatgccccctaacgacagccgaggccccccgggacctaacgacccatacggacgc
ccgccgccgtatgagagagactacggtcctggaggccgggagatggaagcatctcggact
cctctgagcgaggcagagtttgaggagattatgaacaggaacagagcaatctcctccagc
gccatatctcgggctgtatctgacgccagtgcagctgattatggcagtgctatagagact
ttggtgacagccatcagtctgattaagcagtccaaagtgtccgcagatgaccgctgtaag
gtccttatcagttctctgcaggattgcctccatggcatcgagtcaaaaagctacggctct
gcctccaggcgagaacgttccagggaacgtgaccacagccgctctcgcgagaagagccgg
cgacacaagtctcgcagtcgcgacaggcacgaggactattacagagaacgcagtcgggag
cgggaccgccatcgcgagagggaccgggaccgtgatcgggaaagagagagggagagggag
taccggcaccgctag
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