KEGG   Brachyistius frenatus (kelp perch): 138622258
Entry
138622258         CDS       T10614                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bfre  Brachyistius frenatus (kelp perch)
Pathway
bfre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bfre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138622258 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bfre03041]
    138622258 (prpf4)
Spliceosome [BR:bfre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    138622258 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_Aladin DSE1_N PRP4 WDR90_beta-prop_4th ASA1 Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_Vps41 Beta-prop_WDR41 WD_LRWD1 CFAP251_N Beta-prop_WDR19_1st eIF2A WD40_RFWD3 WD40_like Beta-prop_SPT8 Beta-prop_WDR11_1st Tricorn_2nd TRM82_WD
Other DBs
NCBI-GeneID: 138622258
NCBI-ProteinID: XP_069557018
LinkDB
Position
Unknown
AA seq 506 aa
MSDEEDTARAVKRSRVYYGSLEEKERERLSSEAGKGNDGVKAGIKAGNINISSGETLEME
ERVSERQQDALAEFERRRRARQITVSTDDAEVKAGLRALGEPIILFGEGPADRRERLRGV
LSVVGPDALKKSRKDEERAKRSQDECQQTWYHEGSAFLKDARLWLAKYSLPRALKRLEAA
RAQKDVAEATRTMRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATGSWSGLCK
LWSVPDCNLIRTLRGHDTNVGSVVFRPQVGVSLDQSDVSLASCAADGSVKLWNLESDEPV
ADIEGHSDRVSRVSWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLAFHPD
GSLVATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYTLHFSPNGYHLATGSGDNTCKVWEM
RNRKCLYTVPAHQNLVSAVRFQPTEGQFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVM
GVDVSPDGKLIATCSYDRTFKLWLSE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtctgacgaagaggacacggctcgggccgtgaagaggagtcgcgtttactatggaagc
ctggaggagaaagagcgcgagcgtctgagctcagaggcggggaaaggaaatgatggggtg
aaggcgggtataaaggcgggaaacatcaacatctcgtcaggggagactctggagatggag
gagcgggtcagcgagcggcagcaggatgcgctcgctgagttcgagcggcgccgccgagcg
cgacagatcaccgtctccaccgacgacgccgaggtgaaggccggcctccgagcactcggc
gagccaatcatattgttcggagagggaccagctgaccgccgggagagactgcgcggggtt
ctgtcggtggtcggacctgacgctctgaagaagtccagaaaggacgaggagagggccaag
aggtcccaggatgagtgccagcagacgtggtaccacgaaggctccgccttcctgaaggac
gcccggctctggttggccaaatactctctgccccgggcactgaagcgcctggaggctgca
cgcgctcagaaggatgttgccgaggcaactaggacgatgcgccagcaagagctacacaag
agtctgaggaatctcaacaacttctgcagtcagatcggtgatgatcgaccaatcagcttc
tgccactttagcccggactccaaaatgctggccaccggctcctggagtggcctgtgtaag
ctgtggtccgtccctgactgcaacctgattcgtacactcagaggacacgacaccaacgtg
ggttcggtggtcttccgcccgcaggttggagtctcacttgaccaatcagatgtcagcttg
gcctcgtgtgctgctgacggatctgtaaaactgtggaacctcgagagtgacgagccggtg
gctgacatcgagggtcacagtgatcgagtgtctcgggtgtcctggcatccctctggaagg
ttcctgggaacgacctgttatgataactcgtggcgtctgtgggatctggaggttcaggag
gagatcctccatcaggagggtcacagtaaaggagtccacgacctggcctttcaccccgac
ggctccctggttgctaccggaggactggatgcattcggccgggtgtgggacctgcggacg
ggacgctgcgtcgtcttcctggagggacacctgaaagaaatctacaccctgcacttctcc
cccaacgggtatcacctggcgacagggagtggtgacaacacctgcaaggtatgggagatg
agaaacaggaagtgcctgtatacagtccccgcccaccaaaacctggtgtctgctgtccgt
tttcaacccacagaaggtcaattcctgttgactggcgcatatgacaacacagcaaaggtt
tggagtcacccggggtggacgccactaaagacgctcgctggacacgaggggaaggtgatg
ggcgtcgacgtgtcacctgacgggaagctgattgccacctgctcctatgaccgaaccttc
aaactgtggctgtcagagtga

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