Brachyistius frenatus (kelp perch): 138623090
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Entry
138623090 CDS
T10614
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03018
RNA degradation
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138623090 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
138623090 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138623090 (lsm4)
03041 Spliceosome [BR:
bfre03041
]
138623090 (lsm4)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138623090 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
138623090 (lsm4)
Spliceosome [BR:
bfre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
138623090 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
138623090
NCBI-ProteinID:
XP_069558479
LinkDB
All DBs
Position
Unknown
AA seq
151 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGVGRGLFGGRGRGMTG
PGRGQQQQQQQQQQQQPDKKQGKPQGMKNQH
NT seq
456 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctgtctctgctgaagactgcccagaaccatcccatgctggtggagctgaag
aacggagagacctacaacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctccagggatggagataagttctggaggatgcctgagtgctac
atccgaggcagcaccatcaagtacctgcgaatccctgatgagatcatcgacatggtgaag
gaggaggtggtgtcgaagggccgcggccgtggaggcgcccagcagaacaaacagcagggc
aaaggaagaggaggagtcggccgaggtttgtttggcggccggggtcgagggatgaccggc
cctggtcggggtcagcagcagcagcagcagcagcaacagcagcagcagccagataagaaa
caaggcaaaccacagggaatgaagaaccagcactga
DBGET
integrated database retrieval system
