KEGG   Brachyistius frenatus (kelp perch): 138624637
Entry
138624637         CDS       T10614                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
bfre  Brachyistius frenatus (kelp perch)
Pathway
bfre03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:bfre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    138624637 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bfre03021]
    138624637 (taf5)
   03036 Chromosome and associated proteins [BR:bfre03036]
    138624637 (taf5)
Transcription machinery [BR:bfre03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     138624637 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     138624637 (taf5)
Chromosome and associated proteins [BR:bfre03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     138624637 (taf5)
    STAGA complex
     138624637 (taf5)
    TFTC complex
     138624637 (taf5)
    SAGA complex
     138624637 (taf5)
    SLIK complex
     138624637 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd TFIID_NTD2 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_Aladin Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_DCAF12 Tricorn_2nd Beta-prop_Nup120_160 WD_LRWD1 PEP5_VPS11_N VPS8_N LisH_PAC1 PROPPIN Beta-prop_ACSF4 LisH_TPL eIF2A
Other DBs
NCBI-GeneID: 138624637
NCBI-ProteinID: XP_069561084
LinkDB
Position
Unknown
AA seq 747 aa
MAAVQGGMSDAVDEKDIKTEPSGDGFGNNNANDGRLLSTSPGSSASAGSNKSAAGAPEDQ
QTLLAVLQFLKKNKLSESVEILRREAGLPEDSLDPKGGEPSGAGGAAGGEDLDGGDAALL
SRVTVSTLAGAPAPTKAAPAEDQPDVNVVLSAYSQQGDPVLYEVYYSGLKRFIETVLDCH
RAELSQVFYPLFVHMYLELVYNNHETEAKAFFDKFSGDQECYYADDLRILSSLSKKEHMR
GNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKGQI
DAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSMGS
KSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKKIRLGPDNLPSICFYSFLNAYQG
LTAVDFTDDSSLVAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKT
ASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQ
FSPYGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITCTRFHPNSNYVATGSSDRTIR
LWDILNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMIGELKGHTD
TIYSLRFSRDGEILASGSMDKTVRLWDATKAFDDLETDDFTAATGHVHLQDNSQELLLGN
YVTKSTPVVHLHFTRRNLLLAAGSYNP
NT seq 2244 nt   +upstreamnt  +downstreamnt
atggcggccgtgcagggtggaatgagcgacgcggtcgacgaaaaggacataaaaacggaa
ccatcgggcgacggcttcggaaataacaatgcaaacgacggcagactgctctccacgtcg
cccggctccagcgcttcggccggaagcaacaaaagtgcggcgggagccccggaggaccag
cagacgctcctggcggtgctgcaattcctgaaaaagaacaaactctccgagtccgtggag
attttgcgccgtgaagcgggactaccggaggactcactggacccgaaggggggcgagccc
tccggggcggggggcgctgcgggcggtgaggacctcgacggcggggatgctgctctcctc
agccgggtgaccgtgtcaacgctcgccggagcgccggcgccgaccaaagccgcacctgcg
gaggatcagcccgacgtcaacgtggtgctgtcggcttacagccagcagggagatccagtt
ctgtacgaggtctactacagcggcctgaagaggttcatagaaacggtcctggactgccac
cgagcagagctgtcccaggtcttctacccgctgttcgtccacatgtacctggagctggtg
tacaacaatcatgaaactgaggccaaggccttctttgacaagttcagtggggaccaggag
tgctactacgcggacgacctgcgcattttgtccagcctgtcgaagaaggagcacatgaga
ggcaacgagacgctgctggacttccgcaccagcaagttcgtgctgcgtatctcccgcgac
tcctaccagctgctgaagagacacctgcaggagcgccagaacaaccagatctggaacatc
atccaggagcacctctacatcgacatcttcgacggcatgccgcgcagcaagggccagatc
gacgccatgtccggcagcttggcgggagaagccaagcgagaggccaacaaggcgaaggtt
tactacgggctgctgaaggagccagaaatcgagctgcctctcgatgacgaggacgaggag
gcggagaacgaggagggcaaacccaagaagaagaagcccaaaaaggacagcatgggctcc
aagagcaagaagcaggatcccaacgctccttcacagaccaggattccgctgccagaacta
aaagactcggacaagctggacaagatcatgtacatgaaggaggccaccaagaagatccgg
ctaggacccgacaacctcccctccatctgcttctactctttcctcaacgcttaccagggt
ctgactgccgtggacttcaccgacgactccagtctggttgcgggaggcttcgccgactcc
acggtgagagtgtggagcgtcacgccgaagaagctccgcaaggtcaagtcagcagcagac
ttgaatctgatcgacaaagagtccgacgacgtgctggagaggatcatggacgagaagacg
gccagcgagtcaaagatactgtacggacacagcggcccggtgtacggcatcagcttcagc
ccggaccgaaactacttgctgtccagttctgaagacggtacggtccggctttggagtctc
caaacatttacttgccttgtgggctacaaaggacacaactacccggtgtgggacacccag
ttctccccctacgggtactacttcatctccgggggacatgacagagtcgctcgtctgtgg
gcgacggatcactaccagcctctgaggatgttctccggtcacctggccgacatcacgtgc
acacgtttccacccaaactccaactacgtggccaccggctcgtccgaccgcactatccgc
ctctgggacatcctcaacgggaactgcgtccgcatcttcaccggccacaagggtcccatc
cacgcgctggctttctctcccaacgggaagttcttggcgtccggagccaccgacggccga
gttcttctgtgggacatcggccacggcctgatgatcggagagctgaagggccacaccgac
accatctactccctccggttcagccgggacggagagatcctcgcctccggctcgatggac
aagacggtgcgtctgtgggacgcaacgaaagcattcgatgatttagagacggacgacttc
acggcagctacgggacacgtccatctacaagacaactcccaggagcttctgctgggcaac
tacgtgactaaatccacacccgtcgtccaccttcacttcacccggaggaacctgcttctg
gcagccggatcctacaacccctaa

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