Brachyistius frenatus (kelp perch): 138625248
Help
Entry
138625248 CDS
T10614
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03013
Nucleocytoplasmic transport
bfre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138625248
03015 mRNA surveillance pathway
138625248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138625248
Enzymes [BR:
bfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138625248
5.6.2.5 RNA 5'-3' helicase
138625248
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138625248
mRNA cycle factors
Common to processing body (P body) and stress granule
138625248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
UvrD_C_2
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
138625248
NCBI-ProteinID:
XP_069562137
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFDFTDFTLPSQTQTQGQTQSQIDSQVNG
PEGVLQNGDEPVIKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGMGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGHSPMSSMNI
PIPFNLVMPPIPPPGYLGQLNGPTAGRGGGMKGRSGSGGGGGTRGGRQRNRGNMGNGADR
GQHGGHMTGSQASQDQGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacgggccgagctcgcagactctgacgttcctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagttcgacttcaccgacttcaccctg
cccagccagacccagacccaaggccaaacccagagccagatcgacagccaggttaatggt
cctgaaggtgtgctgcagaatggagacgagcctgtgataaaagccagtcagctgctggca
gagctgaactttgaggaggatgaggaggatacctactataccaaggaccttcccgtgcac
gcctgcagttattgtgggattcacgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttctgtaatggccgtggaaacacatccggcagccacattgtgaaccacctggtg
agggcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaacagttttg
gagtgctataactgtggctgtcgcaacgtcttcttgctgggcttcatccccgccaaggct
gactctgttgtggtgttactctgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagccactcatccaggaccgctgcttcctttcttgg
ctcgtcaaaatcccctcggagcaggagcagctccgggcacgccagatcaccgcccagcag
atcaacaagcttgaggagctctggaaggaaaatcccactgcaaccctggaggacctggag
aagcctggagtcgatgaggagcctcaacacgtcctgcttcgctatgaggatgcctaccag
taccagaacatctttggtcctcttgtgaagctggaggctgactatgacaagaaactcaaa
gagtcacagacacaagacaacatcacagtcagatgggacttgggcctgaataagaagagg
attgcttatttcacccttcccaagacagactctgatatgcgcctgatgcagggggatgaa
atttgcctgagatacaaaggagacctggcccctccatggaaaggcatgggacatgtgatc
aaagtccctgataactatggtgatgaaattgccatagagctaaggagcagtgccggggct
ccagtggagatccctcacaattttcaggtggactttgtctggaagtccacttcctttgac
agaatgcaaagtgccctgaagacatttgctgtggatgagacgtcagtgtctggttacatc
taccacaaactgttgggacatgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcactgctcaaggcctgccagacctcaaccactcccaggtgtatgctgtgaagaca
gtgctgcaacgccctctcagtctgatccaaggtcctcctggcacggggaaaacagttact
tctgccactattgtgtaccacctggcaagacagggcaacgggccagtgctggtttgtgct
cccagtaacatcgctgtcgaccagctgactgagaagatccaccagacagggctcaaggtg
gtgagactgtgtgcaaagagcagggaggctatagactcacccgtgtccttcctggctctg
cacaaccagacccgcaacatggacagtatgccagagctacagaagctccagcagctgaag
gatgagactggagagctgtcgtcctcagacgagaagcgctacagagctctgagacgcacc
gctgagagggagctgctcatgaatgctgatgtaatctgctgtacctgcgtgggggcagga
gatcctcgtctggccaagatgcagttccgatcaatcctgattgatgagagcacccaggcc
accgagccggagtgcatggtgcctgttgtcctgggagccaagcagttgattctggtgggt
gatcactgccagctgggacctgtggtaatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtcttgtagttttggggatccggccgatccgcctgcaggtccag
taccgcatgcacccggccctcagcgccttcccctccaacatcttctacgagggctctctg
cagaacggagtcactgccggtgaccgggtgaaaaaaggctttgacttccagtggccgcag
cccgacaagccgatgttcttttatgtcacccaaggccaagaggaaatcgccagctctgga
acatcctatctcaacaggactgaggcagcaaatgtggagaaaataaccacaaggctgctg
aaggctggagcgaagcccgatcagatcggcatcatcaccccttacgagggacagaggtcc
tacctggtccagtacatgcagttcagcggctctctccataccaagctctaccaggaggtg
gaaatagccagtgtcgatgcttttcaaggccgagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaacgatcccagacgtctaaacgtg
gcgctcaccagggccaggtacggcgtgatcattgtgggaaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctgaattactacaaggaacagaaggtcctggtcgagggt
cctctgaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctggtcaat
accatcaaccctggcggtcgattcatgagcacagccatgtatgacgccagagaggccctc
attcctggatctgtttatgatcgcagcagcaacgggcgtacgtccaacatgtatttccag
acccatgaccagatcggtatgatcggcacaggccacagtcccatgtcctccatgaacatc
cccatccccttcaacctcgtgatgccccccatacctccaccggggtacttgggacagctg
aacggtcccactgcaggtcgtggtggaggaatgaagggcaggtcaggcagtggaggaggt
ggtgggacccgcggtggtcgtcaaagaaaccgcggcaacatgggaaacggagcggaccgc
gggcagcatggagggcacatgaccggcagccaggcaagccaggaccagggctcccagccg
ttctcccaggggccactgacacagggctacatcaacatgagccagccgtcacagatgagc
cagcccgggctctcccagcctgaactctcccaggacagttacctaggagatgagttcaag
tcccagattgatgtggctctgtcccaggactccacctaccagggggagcgggcctaccaa
catggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
