Brachyistius frenatus (kelp perch): 138625797
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Entry
138625797 CDS
T10614
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03013
Nucleocytoplasmic transport
bfre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138625797 (upf3a)
03015 mRNA surveillance pathway
138625797 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138625797 (upf3a)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138625797 (upf3a)
mRNA cycle factors
P-body specific factors
138625797 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
138625797
NCBI-ProteinID:
XP_069563065
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDVPREQEGTGLNPKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLCPHLFSRAYINFKNPDDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDTGEADRGKWEKAGGQMKSK
DPKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHYSYCPDGGDKMGKEDREDLGNRKERLRNKVSEKDRPAMQLYQPGARNRK
RMSSSGKGYDCIPAGHSPEPRAELCYDVVTMATGLEKAFEKGKDDQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgagaaggaccagatgaccgtgggcaaggagaagagtgtcgtcgaaatacag
tttcgggacgtcccaagagagcaagagggcaccggccttaaccccaagcagaaagaggag
aagaaagaggtctttacgaaggttgtgattcgaaggctcccgccaaacctgtcaaaggac
cagctagaagagcagctaagtccacttccatcgtacgactactttgaattcttcccagca
gatcaaagcctctgtccccacctgttctccagagcgtatatcaatttcaaaaacccggat
gatatcttgctgttcagggaccgatttgatggctacgtcttcattgacaacaagggccag
gagtatcccgcggtggtagaatttgcccccttccagaagatttccaagaagaagctgaaa
aagaaagatgccaaagctggaagcattgaagaagacccagaatataagcggttcttggag
aattactcctgcgatgaggagaagtctatggccaaccccgagaccctgctgggggagatc
gaggccaagaccagggagctcatagccaaacggacgacaccgctgctggagtacatcaaa
aataagaaaatcgagaaacagagaataagggaggagaagagagaagagaggagaaggaga
gagcttgaaaagaagcgacaaagggaagaggaaaagaggaagcgacgagaggaagagaga
cgcaagcgaaaagaggcggagaagcagaaaaagttgtctgataaagacattaaaattaag
ctcctgaagaagagtgacagagatgatgatgtggattcagaccgaatgaaggacaaaagt
gacaccggagaggcggacagagggaaatgggagaaagctgggggacaaatgaagtcaaag
gaccccaaagaaaaaggtcagcctgagagcgacaaggagcagcgagagcagcacggacgc
agacagagagacaaggatcaccgagggaaagatgaagagaggaagcgacagcgacaccac
tacgaatttgacaagttcatgcgccggaaagatgagaccaaatggggaaagggatactgc
caggaccgggccaagaaagaggggcaccatcactactcttactgccctgatggtggagac
aaaatgggaaaggaggacagggaggacctgggtaataggaaggagcgcctccgaaacaag
gtgagcgagaaggaccgtcccgccatgcagctctaccagccgggcgctcgcaacaggaag
cgcatgagctcgtcgggcaaaggctacgactgcatccccgcgggccactcgcccgaaccc
cgggcggagctttgctacgatgttgtcaccatggcaacggggctggagaaagcgtttgag
aaaggcaaagacgatcagtga
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