Brachyistius frenatus (kelp perch): 138626713
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Entry
138626713 CDS
T10614
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138626713 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138626713 (cpsf2)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138626713 (cpsf2)
U7-dependent histone pre-mRNA processing factors
138626713 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
138626713
NCBI-ProteinID:
XP_069564672
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIESMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPVPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGDGNVLISVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEEYLEKDKVKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAVVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKSKLESGLTNGEEPMDQDLSVVPTKCIASIENLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDEVEDSE
LVMETTPDLGIEHNATAVAAQRAIKNLFGEDEKELSEESDVIPTLEPLPPSEIPGHPSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRVILKQLHMPVKVTRSDSNRKKEL
RVLDVRCTCMNWNLNYIGVFAWWSSERGRRRSTKVAAAEEEEEEEEPDRGAARWIWTHQL
LEQKDGGDPN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacagccgtgtcgggggtccaggaggagtccgccctctgt
tacctgctgcaggtggatgaattccgctttctgctggactgtggctgggacgagaacttc
tcaatggacatcattgaatctatgaaaagatatgttcatcaggttgacgctgtgctcctc
tcccaccctgaccccatccacctgggagccctgccatatgctgtgggcaaactgggtcta
aactgcactatctatgccacgattcccgtctacaagatggggcagatgttcatgtatgat
ctatatcagtctcgaaacaacagtgaggatttcaccctgttcacccttgatgatgtggat
tgtgcttttgataaaatccagcagctgaaatactctcagatcgttaatttaaaagggaaa
gggcacggcctctccatcactcctgtcccagctggacacatgatcggaggcaccatttgg
aagattgtaaaggatggggaggaggagattgtgtacgctgtggatttcaaccacaaaaga
gaaatccacctcaacggctgcacgttggagagcattagtcgtccgtccttactaattaca
gactccttcaatgctgcgtatgtacaaccacgtcgcaaacaaagagatgagcagctgctt
accaatgtaatggagaccctacgtggtgacggtaacgtcctcatctccgtggatacggcc
ggtcgtgtgctggagctggctcagctcctggaccagatttggaggacaaaggacgctggg
ctgggagtttacccgctagctctgctcaacaacgtcagctacaatgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaggacaagagaaac
aaccccttccagttccgacacttaacgctgtgccacagtctggcggacctggcccgggtg
cccagtcccaaggtggtgctttgcagccagccagacctcgagtccggcttctcccgggag
cttttcatccagtggtgccaaaacgccaaaaactccatcatcctgacgtaccgcaccaca
cctggaaccttggcccgttacctcatcgacaaccccggagaaaagatgctggatctggag
gtgcggaaaagagtgaagctcgaaggcaaggagctggaagaataccttgaaaaggacaaa
gtaaagaaagaagcagctaaaaaacttgaacaagcaaaagaggtggatgtggactccagt
gatgagagcgatatggacgacgatctggatcagccggctgtagtgaaaaccaaacaccac
gacctgatgatgaagggcgaggggagccgtaaaggcagtttcttcaaacaagccaaaaag
tcgtacccgatgtttccgacacacgaggagaggatcaaatgggacgagtatggagaaatc
atcaggctggaggagtttctggttcctgagctgcaagccacagaggaggagaagagcaaa
ctggaatctggcttgaccaacggagaggaacccatggaccaggatctgtctgtcgtcccc
accaaatgcatcgcgagtatagaaaatctagaaatcagagctcgggtaacgtacatcgac
tacgaaggccgctccgatggcgactccataaaaaagattatcaatcagatgaaacccaga
cagcttgtgatcgttcacgggcccccagaagccagtctggacctggcagagtcctgcaag
gctttcagcaaagacatcaaggtctacacgcccaaactgcaggaaacggtggacgcaacc
agtgagacccacatctaccaggtgcggttgaaagactccttggtgagctcgctgcagttc
tgcaaggccaaagacacggagctggcgtggatcgatggcgtgctggacatgcgcgtggtg
aaggtggacaccggcgtgatgctggaggagggtgtgaaagacgaggtggaggacagcgag
ctggtcatggaaaccacccccgacctcggcatcgaacacaatgccacggcggtggcggcc
cagcgcgccattaagaacctgtttggagaggacgagaaggagctgtctgaggagagtgat
gtcattcccacgctggagccactgcctccaagcgagattccagggcatccgtcggtgttc
atcaacgagccccgtctgtctgacttcaagcaggtcctgctgagagagggcatccaggcc
gagtttgtgggaggagtgctggtatgcaacaacatggtggctgtccgcagggttatcttg
aagcagctccacatgccggtgaaggtcacgagaagtgattcaaatcgcaagaaagaacta
cgagtcttggatgtgagatgcacatgcatgaattggaatttaaactacattggcgtcttc
gcatggtggagttcagagagaggacgacggaggagcacaaaggtggccgccgccgaggag
gaggaggaggaggaggaacccgacagaggagccgctcggtggatttggacgcaccaactt
ctcgaacagaaagatggaggggatcctaactga
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