Brachyistius frenatus (kelp perch): 138626891
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Entry
138626891 CDS
T10614
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03030
DNA replication
bfre03410
Base excision repair
bfre03420
Nucleotide excision repair
bfre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138626891 (lig1)
03410 Base excision repair
138626891 (lig1)
03420 Nucleotide excision repair
138626891 (lig1)
03430 Mismatch repair
138626891 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfre03032
]
138626891 (lig1)
03400 DNA repair and recombination proteins [BR:
bfre03400
]
138626891 (lig1)
Enzymes [BR:
bfre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138626891 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
138626891 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
138626891 (lig1)
DNA replication proteins [BR:
bfre03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
138626891 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
138626891 (lig1)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
138626891 (lig1)
NER (nucleotide excision repair)
Other NER factors
138626891 (lig1)
MMR (mismatch excision repair)
Other MMR factors
138626891 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
138626891
NCBI-ProteinID:
XP_069564970
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MQRSIASFFQPKNQNNEVRKKRIDEPVKKPLKSPLKVQNGVPEADSPVKKVSKRSRQILD
SDDDEAPAVKEPVGDREASGKTEKRDVVFKAVPTPLSPPPATPTPVTPATPITPVTPASS
SSPGTPSSISPSGIVKRTTARKMFPKRKLDDSRREEAEEGQQSKRPRVGTSAGSAGNNEE
LMEEEVKEETAEQAVTDSPVEEVEKKKKGEEDEEEKEKKKKKKEKEKKKKKVVVEKDTRD
KGENSKEQKEAKEQKDKQPARKTPISTFFAPRKAAMKKEEEKEEEKKEEKEKEEGGGRKT
TAERRSSEEEESKDSKRESTSGPTDYDPSRPNYHPEEHACWRRGQRVPYLAVARTFQKIE
EDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQ
ATGRQLDKVKAETQERGDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIANMSGNSAM
NKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQAVMDAG
KGMNAESRRAWIEEKSLILKQTYCEMPNYDILVPVLLKEGIDQLPNHCKLTPGVPLRPML
AHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIISR
ISKVKTASVVSCVLDSEAVAWDREKKQIQPFQVLSTRKRKDVDASEIKVQVCVYAFDLLY
LNGESLVRQPLCRRRALLRESFSEVEGEFVFARFIDSDNTDAIADFLEQSVRDSCEGLMV
KTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTMDLCVIGAYLGKGKRTGTYGGFLLACYD
EDNEEFQAVCKVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVSVCVCVCLCVCVCLSL
CVCVCVCVSVCVCVCVCLCVCVCVSVCVCVCLSLSLCVCVCVCVSLCVCLCVCVCVCVCH
HFIVQLEEVFI
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcatctttctttcagcccaagaaccagaacaacgaggttcggaag
aaaagaatcgatgaacccgtgaaaaaacctctgaaaagccctctgaaggtgcagaacggc
gtcccggaggccgattctcccgtcaagaaggtttccaaacgcagccgtcagatcctggac
agcgacgatgacgaggcgccggcggtgaaggagcccgttggagacagagaggcttctggg
aaaacggagaagagggatgttgtgtttaaggccgtccccaccccactgtctcctccacca
gccaccccgacgcccgtcaccccagcgacgcccatcaccccggtgaccccggcctcctca
tcttcccccggcactcccagctccatctccccctccgggatcgtcaagcgtacgacagcg
aggaagatgttccccaagaggaagctggacgacagcaggagggaggaggctgaggagggg
cagcaaagcaagcgcccccgtgtggggaccagcgccggcagtgcaggaaacaacgaggag
ctcatggaggaggaggtgaaggaggagacggctgagcaggcagtgaccgacagcccagta
gaggaggtggagaagaagaagaaaggagaggaggatgaggaggagaaggagaagaagaag
aagaagaaggagaaggagaagaagaagaagaaagtggtggttgaaaaggacacgcgagac
aaaggagagaactcgaaggagcagaaggaagcgaaggagcagaaagataagcagccggcc
aggaaaactcccatcagcactttctttgctcccagaaaagctgccatgaagaaggaggag
gagaaggaggaggagaagaaggaagagaaggagaaggaggaggggggagggaggaagacg
actgccgagaggaggagctccgaggaggaggagagtaaagactccaaacgcgagtcgacg
tccggaccgacagactacgacccgtcccgacccaactaccacccagaggagcacgcctgc
tggaggcggggccagagggtgccgtacctggcggtggctcgcacctttcagaagatcgaa
gaggactccggcaggctgagaaacatcgagactctgtccaacctgctgcgctccgtgctg
ctgctgtctccagacgacctgctgtgctgtgtgtacctgtgtttgaaccagcttggcccc
gcctacctggggatggagctcggcgttggagagacggtgctgatgaaagccgttgctcaa
gcaaccgggcgacagctggacaaagtcaaagcggagacgcaggagagaggagatctgggc
ctcgtggccgagagttcccgtagcaaccagcgcatgatgtttcagccggccagtctgacc
gcagggggcgtgttcaggaagttaaaggaaatcgccaacatgagtggaaactcagccatg
aataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttcagaggcccgc
tacatcgtcaggtctctggccgggaagctgaggatcggcctcgctgagcagagcgtcctg
tctgcgctgagccaggccgtctgcctcaccccacctggacaagctgtgatggacgcgggg
aaggggatgaatgctgagagcagacgggcctggatcgaagagaagagtctcatcctcaaa
cagacctactgcgagatgcccaactacgacatcctcgtcccggttctgctgaaggagggc
atcgaccagctacccaatcactgcaagctgactccaggtgtgccgctgagacccatgttg
gctcatcccaccaagggcgtcggcgaggtgatgaagaggtttgacgaggcggcgttcacc
tgcgagtacaaatacgacggggagcgtgcacagattcacatcctggaaaacggcgaagtt
cgaatattcagccgcaaccaggaggacaacaccagcaaatacccggacatcatctcccgc
atctccaaggtgaagacggcctcggtggtgtcctgcgtcctggactcggaggcggtggcc
tgggatcgggagaagaagcagattcagcccttccaggtcctcagcaccaggaagaggaag
gacgtggatgcctcagagatcaaagtccaagtgtgtgtgtacgccttcgacctcctgtac
ctgaacggtgagtccctggtacggcagcccttgtgtcggcgccgtgctctgctgagagaa
agcttctctgaggtggagggagagttcgtcttcgcccgattcatcgactccgacaacacg
gacgccatcgcagacttcctggagcagtctgtccgagactcctgtgaaggcctgatggtg
aagactctggagaaggatgcaacctatgaaatcgccaagcgctctcataattggctcaag
ctgaagaaggactacctggagggcgtgggcgacaccatggacctgtgtgtgatcggggcg
tacctggggaaagggaagaggacgggcacctacgggggattcctgctggcctgctacgac
gaggacaacgaggagttccaggctgtctgcaaggtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtgtg
tgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctgtctctg
tgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtg
tgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctgtctctgtctctgtgtgtgtgtgtg
tgtgtgtgtgtgtctctctgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtcac
cacttcatcgtacagttagaagaagtgttcatctga
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