Brachyistius frenatus (kelp perch): 138628388
Help
Entry
138628388 CDS
T10614
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03013
Nucleocytoplasmic transport
bfre03015
mRNA surveillance pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138628388 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
138628388 (acin1a)
03015 mRNA surveillance pathway
138628388 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138628388 (acin1a)
03041 Spliceosome [BR:
bfre03041
]
138628388 (acin1a)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138628388 (acin1a)
Spliceosome [BR:
bfre03041
]
Complex C
Other components
EJC/TREX
138628388 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
138628388
NCBI-ProteinID:
XP_069567506
LinkDB
All DBs
Position
Unknown
AA seq
1774 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYETNEQEDHAEVNNSTSCP
PPAQDVTPATAEQHKPPGPSDGEGLFGAVNEGQGNRNQEADMSSPPASGSVAVHIPGGEH
RPERGSASSEVAGDSDDEDSEDGEEDGDDDDWDSGARRRNLREPARVPAARERSGASCQP
QQQHIPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARRSPSSSSSGSSSS
GSRSSSPEPQRSGHAERKPGPLTLLARKMESEGAFSGAGWHGADGEGDRQDSSSPSAALF
LGRGPPEGLVSAITHTANTAGHVSFPMIPGTNQGIMGAHIQVPVSVLKATAAEERDRERE
AELVREKAAELERQEKLRKLEQEQAMEEERERALLLEREEKERALERERFELQQALEREE
REKALQRERELALEQERQERERALAKEREEQERALELERQKELERQRALEQEHLQREREE
RERRERLERERAQEAERKERMERERALEQERLEKERLERERALERERLEREKALEQERLE
RERVLEQERIAIERERIEREKALEQERLERERREKERIERERAAEQERIEREKALERERE
KAEREAVLEQERLRKERAEKERKERLEREKALEQERMEKERKEKERALEQERERKEKERA
LEQERERKEKERALEQERERKEKERAVEQERERKEKERAVEQERERKEKERAVEQERERK
EKERAVEQERERKEKERAVEQERERKEKERAVEQERERKEKERAVEQERERALEQERLEK
EKAMQKEKQEQERSLEQEKERARMAEKERESHLPPSKRGREIGLTHQPTPPPISTGPSQK
SSTEAGEKEDVPAPVSRSEGQAAESGTPMSPHSSFKKFRFLRDSPLQPQPSPTSLVIKRP
RTFSDSPQPWALPVSSPTSVGERQPEGHHPSTEKEDPQRRTNQGDAAGNPSKKETGLSAA
PGHSPKEEGATRLLSEDKEQAASAKTAQAAKESSKKAKEGDENKGSSRPVDAAERRGRDA
KKEEKPRRQRSSSNDSSSSDSDSGSSSSQSSDSSTSSQEKTSSTSRGRREGKGERDSSPV
HRVPGEARAEGLKETRKDTSAEKSDTTPDGDSLTKKRFTESPTREETRRKKRTDSEGEKD
KQRQVKETAMADPEKLLETSEETPKAFSARKISLSSSKSSPGTSSAEGEQESGAVAGRKR
RWGSSTAVTAKKPSISITTDSLKSLIPDIRPSPGQEAVVDLHPEEAVLSGAEDEDRERSD
QDLQIRRTVTQVVHSESQENGQKEVKRSKREELEEEDLLGERERTKAHEEQMDASIPGDV
EQQSPTHTSHDVELNTVTPSDTLIRRSISQQKTSVSITIDDPVRTARQPSPPRGKVSTIV
HVCNLVRPFTLGQLKELLSRTGTLVEDGFWIDKIKSHCFVTYSGLEEAVATRAALHGVKW
PQSNPKVLSVDFCQQDELDFHKGSGATDRPGGEDEGPGRGRTSGIPSLLPERDQWAERER
EMERRERARAEREWDRDKVREFGKSGDEKEGGPRRSRSRERRRKERGKSKEKKTEKKEKT
AEDPPAKLLDDLFRKTKAAPCIYWLPLTEEQFVQREAARAERMKEREKRRKEQEEEEEKK
REEERKERMKAGGGTTGDRSEGEKEKEKDKDKEKDKDKDRERDRDRGRDRERERERERER
ENDKRRDGYRRPGGGGAGGGRRSRSRSEPRDRRR
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtcccttcgagtagcg
gacttaaaagctgctcttgaggaaagagggctgtcgaagagcggacagaagaacgcgctc
atcaaaagactcaagggggctctcatgctggagaatttgcagaggacctccactgctcat
attggactccagccaaactcacagattggtgaggaaatgagccagaacagctttatcaag
cagtatctggctaaacaacaggagctcctgaggcagcgtctggagagagaggctcgcgaa
gcatatgaaaccaacgagcaagaggaccatgcagaagttaacaacagtacttcatgtcct
cctccagcccaggatgtcacaccagccacggctgagcagcacaagccacctggcccttct
gatggagagggattgtttggtgcagtgaatgagggacaaggtaacaggaaccaggaggct
gacatgtccagtccacctgcttctggctctgttgccgtgcacattcctggtggtgagcat
cggccagagaggggctctgcttccagcgaagttgcaggtgacagcgatgatgaggacagc
gaggatggggaggaggacggtgacgatgacgattgggacagcggtgctcgacggagaaac
ctcagagagccagccagagtgcctgcagcacgggagaggtccggagcgtcctgtcaaccg
cagcagcaacacatcccttcccttttgtctcctcagctgcgccagccaacacctcctccc
tccccacctccagagttatcattccccctgcccgacacccctaaacagagcccacctagt
ccagatgttgccccagctaggcgctcacccagctcttccagctctggttcttccagcagc
ggcagccgcagtagcagccccgagccacagaggagtggacatgccgagcgcaaacccggc
ccgctgacccttttggcacgtaaaatggagtcagaaggtgctttctccggagcgggttgg
catggcgcagatggggaaggcgatagacaggacagcagttcgccctcagctgcattgttt
ctaggcagagggcctcctgagggtctggtgtctgccatcactcacacagccaacactgct
ggccatgtatcatttcccatgattcccggcaccaaccagggtatcatgggagcccatatt
caagtacctgtgagtgtgctcaaggcaactgcagcagaagagagggacagagagagagag
gctgagctagtgagagaaaaggcagccgagctggaaaggcaagagaagctgagaaaactc
gagcaagaacaagcgatggaggaggagcgggaaagagctctcttactggagagagaggag
aaggagagagctctggagagagaacgatttgagctacagcaggccttagaaagagaggaa
agagaaaaggctttgcagcgggaacgggaacttgctctagaacaggagaggcaggagagg
gaacgagctttggctaaagagagggaagagcaagagcgagccttagagctggagagacag
aaggagctggaaagacagagagccctggagcaagaacacctgcagagagaaagagaggag
agggagaggcgagagaggttagagagggagagagctcaagaggctgagagaaaggagagg
atggagagagagagagctctggagcaggaaaggttggaaaaggaaaggttggagagggag
agagccttggagcgagagagactagagagagagaaagccttggagcaggagagactagag
agagagagggttttggagcaggagagaatagccatagagagagagaggatagaaagagaa
aaggctctagagcaagaaagactggagagggagaggagggaaaaagaaaggattgaaaga
gagcgagcagcagagcaagagaggatagagagggaaaaggccctggaacgagaaagggag
aaggcggagagagaggctgtcctggaacaggagaggttgaggaaggaaagagctgagaag
gagaggaaagagaggctggagagggagaaagctctagagcaggagaggatggagaaggaa
agaaaggagaaggagagggctttggagcaagagagggaaagaaaggagaaggagagggct
ttggagcaagagagggaaagaaaggagaaagagagggctttggagcaagagagggaaaga
aaggagaaggagagagctgtggagcaagagagggaaagaaaggagaaggagagagctgtg
gagcaagagagggaaagaaaggagaaggagagagctgtggagcaagagagggaaagaaag
gagaaggagagagctgtggagcaagagagggaaagaaaggagaaggagagagctgtggag
caagagagggaaagaaaggagaaggagagagctgtggagcaagagagggaaagaaaggag
aaggagagagctgtggagcaagagagggaaagggctcttgaacaggagaggttggagaag
gagaaggccatgcagaaagaaaagcaggagcaggagaggtcactggaacaagaaaaagag
agagcaaggatggctgaaaaggagagggagagtcacctgcctccatcaaaacgtggtcgg
gagatcggtctcacccaccagcccacccctccccccatctccacaggaccatctcaaaag
tcatccacagaggcaggagagaaggaagatgttcctgctccggtgtcccggagtgaaggc
caagcagcagagtccggtacccccatgtctccacactcctcgttcaagaagttccgcttc
ctaagggactccccacttcagcctcaaccctcaccaacctccttggttataaagcggccc
cgtaccttctctgatagccctcagccttgggccttgcccgtctcctcacccaccagtgtt
ggggaacgccagccggagggacaccacccttccactgaaaaggaagatccgcagagacgg
acaaaccagggggacgctgcaggaaacccgtctaagaaggagaccgggctcagtgctgct
ccgggccacagtcctaaagaagaaggggccacaaggctcctatctgaggacaaagaacag
gccgcctcagcgaagactgcacaggctgccaaggagtcctccaaaaaagcaaaagaaggg
gatgaaaacaaaggctcctcgaggccagtggatgctgcagagcggaggggaagagatgca
aagaaggaagagaaaccaaggagacaaagatcatcgtctaatgattcctcttcctcagat
tcggactctgggtcttcatcatctcagtcttctgactcatcaacatcatctcaagagaaa
accagctctacctccagaggtagaagggaggggaaaggtgaaagagattcttcaccagtg
caccgggtgccaggagaggctcgggctgagggtttaaaggaaacccgaaaagacacgtct
gcagagaagagtgacaccacaccagatggagacagtctcactaagaaacggttcactgaa
tcgccaactagagaggagacacgtcggaagaagagaacggacagcgagggagagaaggac
aaacaaaggcaggtgaaggagactgccatggcagatccagagaagcttcttgagaccagc
gaggagacaccaaaggccttctcagctcgtaagatctctcttagcagcagtaaatcttcc
ccaggcaccagcagtgctgagggtgaacaggagtctggggctgtggccggtcgcaagagg
aggtggggctccagcaccgctgtcactgccaagaaaccttccatcagcatcaccacggat
tcactgaagtctctgatcccagacatcaggccaagtccaggccaggaggccgtagtggac
ctccatccagaggaagccgtcctctctggggctgaggatgaagacagggagcgctctgac
caggaccttcagatccgacgcaccgtcacacaggtggtgcattcggaaagccaggagaac
ggtcagaaagaggtaaagaggagcaagcgtgaagagttagaggaagaagatctactggga
gaacgagaaaggacaaaggcccacgaagagcagatggacgcgtccattcctggagacgtg
gaacaacagtcacccacacataccagccatgatgtagaactcaacactgtgacccccagc
gacaccctcatacgtcgttccatcagccagcagaaaactagtgtttccatcacaatcgat
gaccctgtccgcaccgcccggcagccctcaccgcctcgcggcaaagtctccactatcgtt
cacgtctgcaacctggtgaggcccttcactctgggacagctgaaggagctgctcagcagg
accggcacgctggtggaggacggcttctggattgacaaaatcaagtcccactgctttgtc
acgtactctggcttagaggaggcagtcgccacgcgggctgctctccacggagtgaaatgg
cctcagagcaaccccaaagtcctcagcgttgacttctgccagcaggatgagttggacttc
cacaaaggctcgggtgcaaccgacagacccggaggggaggacgaagggcccggccgcggt
cgaacatcagggattccctctctcctccctgagcgagaccagtgggccgagcgcgagcgc
gagatggagcgccgggagcgggcccgggccgagcgggagtgggaccgagacaaggtcaga
gagtttggaaaatccggggacgagaaggagggaggtccccgaaggtcgcgctccagagag
agacgacgtaaggagaggggaaagagcaaggagaagaagacggagaagaaggagaaaact
gctgaggatccgcctgcaaagctgctggacgatttgttccgaaaaactaaagcagctcct
tgcatatactggcttcctcttacagaggagcagtttgttcagcgggaagctgcccgagca
gaacggatgaaagagcgcgagaaaaggaggaaggagcaggaagaggaggaggagaaaaaa
agggaagaggagcgcaaggagaggatgaaggctggaggtggcacaacaggagaccggagt
gagggtgagaaggagaaggagaaggacaaggacaaggagaaggacaaggacaaggacaga
gagagggacagagaccgaggtagagacagggagagggagagggagagggagcgggagagg
gagaacgacaaacgcagggatggctaccgtaggccggggggcggcggggcgggggggggc
cggcgctcacgcagccgcagcgaaccacgagacaggcggcgctaa
DBGET
integrated database retrieval system
