Brachyistius frenatus (kelp perch): 138628738
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Entry
138628738 CDS
T10614
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138628738 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfre03021
]
138628738 (smarcc1a)
03036 Chromosome and associated proteins [BR:
bfre03036
]
138628738 (smarcc1a)
Transcription machinery [BR:
bfre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138628738 (smarcc1a)
Chromosome and associated proteins [BR:
bfre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138628738 (smarcc1a)
PBAF complex
138628738 (smarcc1a)
GBAF(ncBAF) complex
138628738 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
138628738
NCBI-ProteinID:
XP_069568034
LinkDB
All DBs
Position
Unknown
AA seq
1138 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPAGGGGAAMGRKKDGGPSTKFWESSDTISQLETVRLWIGKH
YKKHVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAAGALCHIL
GSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSTDIEQKQAS
KLKDIIKRHQGSITDDKSKATHHIYPSSSQQEEDEWLRPVMRKDKQVLVHWGLYPDSYDT
WVSASEVDGDLEDPPSSDRPWKVHTKWVVDTDSFNEWMNEEDYEVDEHKKPVSFRQRIFP
KEEESSRTPDRKERKANSASKKRRRSPSPPSTPAESRKKGGKKGNSGPHWKRRGHRGEEE
DTEEDVTKDMDDSSAGASMEEGSGSKNANSKKDSENTPVKGGTLADLDDMEDDSVLSGGK
DDEEQGKGEINRLMDASEDNVTEQTHHIIIPSYATWFDYNCIHEIEKRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDS
ESRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQPMPNFIDKGKDKAIDLQNFGL
RPDLYKKNAKGKVITSTRDWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLESTETTLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVEDAARTTGKVDPSFGLESSGIAGTAPEEPEKTGEHRVSGCSK
ETTEPEKMDTDSDSQQADKAELKDEAEKPSESAEKSDKTEAAAEKVKKEGGESSEREEES
EEGEEAKKPPAADKDKEESMETSSSEQEKEKEEKAATEEGEDKRKKLEHDIGEGNIATAA
AAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEL
QRQQLLTERQAFHMEQLKYAEMKARQQMEQQAAAAAAAAAQAAAAAAQAQGQAPGSGPHA
GGPPPSGMHPGGPPPHHGGPPPGAAMHPGYPPMGHHPMGPHHPVQTGPMGPGQPIPGRML
TGPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEPIPPVPVGPPAPASGRVADN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggcccg
gccggcggcggaggggccgcaatgggacgcaagaaggacggcggcccatcgacgaaattc
tgggagagttcagacacgatatcccagctggagacggtgcggctgtggatcgggaagcac
tacaagaagcatgtccagaacgactccccctccagcaagtccttggcgggcctggtggtc
cagctgctgcagttccaggaggacgcgtttgggcgccgggtcaacaatccagctctgacc
aaacttcctgccaaatgtttcctggatttcaaggcggccggtgctctctgtcacatcttg
gggtccgtgtacaagtttaagagcgagcagggctggcgcagattcgacctgcagaacccg
tctcggatggacaggaacgtggaaatgttcttaaacgtagagaagaacttggtccagaat
aactgcctgacccgacccaccgtcttcctgtcgacggacatcgagcagaaacaggccagc
aagctcaaagacatcatcaaaaggcaccagggctccatcaccgatgataagtcgaaggcc
acccaccacatttacccctcatcatcccagcaagaagaagacgagtggctgcgtcccgtt
atgaggaaagacaagcaggtgctcgtgcactggggtctctacccggacagctatgacacc
tgggtgtcggccagcgaggtggacggcgacctggaggacccgcccagcagcgacagaccc
tggaaggtccacaccaagtgggtcgtggacaccgactccttcaacgagtggatgaacgag
gaggactacgaggtggacgagcacaagaagcccgtcagcttccgccagaggatcttcccc
aaggaggaagagtcttcccgtacgcccgatcgcaaggagcgcaaggccaactccgccagc
aagaagaggaggcgctcgccctcgccgcccagcacacccgccgagtcccgcaagaaggga
ggcaagaaggggaactcgggacctcactggaagcgacgaggccacagaggcgaggaggag
gacacggaggaggacgtcacgaaggacatggacgactcctcggccggcgccagcatggag
gagggcagcgggtccaagaacgccaactcgaagaaagacagcgagaacactccggtcaaa
ggagggactctagctgacctcgatgacatggaagatgactccgtgctgtctggtggaaag
gatgacgaggaacaaggcaaaggggagatcaacagactgatggacgccagcgaggacaac
gtgaccgagcagacgcaccacatcatcatccccagctacgccacctggttcgactacaac
tgcatccatgagattgagaaaagagccctgcctgagttcttcaacggaaaaaacaagtcc
aaaactccagaaatatacctggcttatcgtaacttcatgatcgacacgtaccggctaaac
cctcaggagtacctcacctccacctcctgccgcaggaacctgaccggggacgtctgcgcc
atcatgagagtccatgcgttcctggagcagtggggtttggtgaactaccaggtggactcg
gagagtcgcccgttgcccatgggccccccacccacaccccacttcaccgtgctggccgac
accccctccggcctcatgcccctcaaccaccgaccccctccgatcccgcctcaacagccg
atgcccaacttcatcgacaaaggcaaagacaaggccatcgacctgcagaacttcggcctt
cgccccgacctctacaagaagaacgccaagggtaaagtgatcacctccaccagggattgg
accgagcaggagactctgttgctgctggaggctctggagatgttcaaagacgactggaac
aaagtgtcggagcatgtgggttcgcgcacccaggacgagtgcatcctgcacttcctgcgg
ctgcccatcgaggacccgtacctggagagcaccgagacgaccctgggccctctggcctac
cagcccatccccttcagccagtcgggaaaccccgtcatgagcacagtagccttcctggcc
tccgtggtcgaccccagggtggcatctgctgctgccaaagcagccctcgaggagttctct
cgcgtgcgtgaggaggtgcccgccgagctggtggaggctcacgtgaagaaggtggaggac
gcggccaggaccacgggcaaggtggacccctccttcggcctggagagcagcggcatcgcc
gggaccgcccccgaggagccggagaagactggtgagcatcgcgtgtccggatgtagtaaa
gaaaccacagagccggaaaagatggacacggactcggactcccagcaggccgataaggcc
gagttgaaggacgaggccgagaagcccagcgagtccgcggagaagagcgacaagacggag
gcggcggcggaaaaggtgaagaaggagggcggcgagtcgtccgaacgcgaggaggagagt
gaagagggggaggaggccaagaaaccgccagcagcagacaaagacaaagaggaatctatg
gagacgtcgtcctcggagcaggagaaagagaaggaggagaaggcagccacggaggaggga
gaggacaagaggaagaagctggaacacgacatcggggagggaaacatcgccaccgcggcc
gccgccgccctcgcatccgccgccaccaaggccaagcatttggccgccgtggaggagaga
aagatcaagtcgctggtcgctctgctggtggagacccagatgaagaagctggagatcaag
ctgcggcacttcgaggagctcgagaccatcatggaccgcgagaaagaggccttggagctt
cagaggcagcagctgctcaccgagcgtcaggcgttccacatggagcagctcaagtacgcc
gagatgaaggcgaggcagcagatggagcagcaggcggccgccgccgccgccgctgccgcc
caggcggccgccgccgccgctcaggcgcagggacaggcgcccggatccggaccccacgct
ggggggccgcctccgtcgggcatgcaccccggaggacccccgccacaccacggagggcca
ccgcccggcgccgcgatgcacccgggctacccgccgatgggccaccaccccatgggcccg
catcacccggtacagacaggaccgatgggacccggccagccgataccgggacgcatgctg
accggcccgccctctgccggcccccctcccggcggcatgcctcccatgatgcctccgcgc
caccccggggctcccaacggcatgtaccccggcccgccacccgcgcagcccgaaccgatc
cctcctgttcccgtgggtcctccggcgcctgcgagcggacgagtcgctgacaactaa
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