Brachyistius frenatus (kelp perch): 138629770
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Entry
138629770 CDS
T10614
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04382
Cornified envelope formation
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138629770 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138629770 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138629770 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138629770 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfre04147
]
138629770 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
bfre00536
]
138629770 (col4a2)
Exosome [BR:
bfre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138629770 (col4a2)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138629770 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138629770
NCBI-ProteinID:
XP_069569794
LinkDB
All DBs
Position
Unknown
AA seq
1675 aa
AA seq
DB search
MQGQHNTGQKTLRLLLLCLFVAILASGAHAGGKKHSGPCGGRDCSGGCKCFPEKGARGAP
GPLGPQGPHGPSGRPGDPGIEGPKGQKGDSGRGGMIGLKGNMGMTGVPGFSGNNGIPGHP
GQAGPRGKPGADGCNGTHGEPGLPGGSGYDGGTGFPGQPGRKGEKGETLEISVYMQRFRG
DPGAPGLNGIFGPTGNPGWQGNRGLQGPKGPPGPPGPRGSKGTMTKVFKGLKGDQGDIGP
PGQPGNSTHQHALPPSGHQQQGPPGEKGLKGESGDLADNRGEKGVVGLPGPRGAGGANGR
PGPRGDPGETGPKGRDGLKGVMGDRGDLITSESLWPGSSTAGPPGPPGEQGPQGERGPVG
DQGFPGPPGRPAFETQQQVWDFFGPFGFKGDQGEKGQQGEPGHPAVSAGPPGADGRPGDR
GSPGPKGTWAEFFKGAPGGGGRPGNAGSKGVKGDHGECVCTNGNSPPGLPGPAGEVGDPG
MTGEFGREGDLGDPGLIGDDGLSGLPGPGGVPGPKGQKGKASVATEKGYPGEPGDSGKDG
VAGASGAPGLNGLLGVPGSQGLPGEGPRGAHGDKGFPGFPGQPGAAGLRGEAGSDLGGFK
GQRGLPGDDGLVGYHGVPGTPGSPGGCSPTGDGGQVDVTGLCKAFPGPPGPPGLPGPNGS
PGFQGLPGQKGTTGSYGVKGEKGEQGDQGLGGRPGPPGFAGPRGDLGVPGIKGSVGVPGS
SGMPGRYGIQGEKGVHGEILGASFGPPGDPGRSGLQGDKGQSGDPGEQGYPGMDGMPGMI
GFKGLSGPAGLEGKLGKPGPAGNYGFPGDPGRGGSPGPHGATGQPGVTGERGTEGNPGPP
GPAGLKGIPGAYGEDGAIGDYGQPGNPGQPGPGGHPGLPGMKGYKGSHGMSGFLGVKGEQ
GLAGFSGSKGESGVLGLLGPKGVEGQSGEKGDRGLRGPPGEKPQIPAQMIVDMKGTKGEY
GKFGNQGFVGPRGTKGFPGVPGFEGTHGLPGDPSSKKGYYGEPGAQGLPGVKGMPGPTGN
RGITGFEGMSGNKGIKGSPGAYGASGDEGRKGPKGEKGLIIDIPGSTGLRGEDGIPGDPG
QEGLSGPTGDRGVPGFDGIKGKKGTSGFPGIAGYPGSDGQKGTPGNQGQKGFPGTPGKEG
HPGSPGFPGNKGYPGLKGLYGLYGLKGQKGLTGTPGLDNFGPAGESGPTGQKGESGDPNN
QPGFPGTAGLKGFQGPLGDHGQPGLPGLRGPEGPDGTPDKPGPGGEPGFGGPAGYRGFPG
AQGTPGVDAPPGEKGVPGSDGFPGFPGAKGFKGDYGPTGYRGPNGVSGKKGVKGGQGLMG
VPGTIGVKGERGPAGPKGGTGLTGVPGPPGKQGLPPIPTRVPGERGPSGPQGIQGPKGGK
GETGPQGPPGNSGFMGPIGQKGMPGISGTPGMPGFRGELGQVGHPGLQGMEGHRGNPGIQ
GLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGS
CLPRFSIMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAP
SVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTAPFI
ECNGAKGTCHYFANKHSFWLTSVEQSFHTEPAAETLKAGQLLSRISRCQVCMKNL
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacaacacaacacagggcagaagactctgaggctgctgcttttgtgcctcttc
gtcgccatcctcgcctcgggagcgcacgcaggtgggaagaagcacagcggcccctgtgga
ggacgagactgcagcggaggctgtaaatgtttcccggagaagggtgccaggggtgcccct
gggcctcttggtccacagggcccacatgggccttcggggagaccaggggatccaggtatc
gagggtccaaaagggcagaaaggtgacagtggccgtggtggcatgattggtctcaaagga
aatatgggaatgaccggtgtgcccgggttctctggaaacaatggtattcctggccacccc
ggacaagctgggcccagggggaagccaggtgcagacggctgtaacgggactcatggagaa
ccagggttaccggggggatccggctatgacggcggaacgggttttcctggacaaccaggc
aggaagggagagaagggagaaactctggaaatcagtgtgtacatgcagcgtttcagggga
gatccaggcgcaccaggactcaatggaatatttgggcctacaggaaatccaggatggcaa
ggtaacagaggcttacaagggccaaagggtcccccagggcctcctggtccccgtggatca
aagggcactatgaccaaagtgttcaaaggactcaaaggagaccagggggacattggacca
ccagggcaaccaggaaactcgactcaccagcatgctctgcccccctctggacatcagcaa
caaggacctcctggagagaaaggtctgaaaggagaaagtggagatctggcagacaacaga
ggagaaaagggtgttgtgggattacctggaccgcggggtgcagggggtgcaaacggaaga
cctggaccaaggggagatcctggtgaaacaggaccaaaaggcagagatggtctgaaggga
gtcatgggtgacagaggagacctgattacatcagaatctttgtggcctgggtcttcaacg
gcagggccccccggtcctcccggcgagcagggaccacaaggagagaggggaccagtagga
gatcaaggcttccccggaccccccggacgtcctgcctttgaaacacagcaacaagtgtgg
gatttcttcgggccctttggtttcaagggagaccaaggagagaagggccaacaaggagaa
ccaggacaccctgctgtcagcgcgggacccccaggagccgacgggcgtccaggagacaga
ggctctcctggaccgaaaggaacatgggcagagttctttaagggagctcccggaggagga
ggaaggcccggcaatgcaggctccaaaggagtgaaaggtgatcacggagaatgtgtgtgc
accaatggaaactctcctcctggtttgcctggccctgctggcgaggtcggtgatcctggg
atgactggagagttcggtcgggagggcgatttaggagatccgggtctcatcggagatgac
gggctttctggacttcctgggcccggtggcgtgccagggccaaaaggacaaaaaggaaaa
gcaagtgttgccacggagaaaggatatcccggtgaaccaggggattcaggaaaagatggt
gtggcaggagcatcgggtgctccaggcctgaacggtcttcttggtgtccctggcagtcaa
ggtcttccaggagaagggccccggggagcacatggagacaaaggtttcccgggatttcct
ggtcaacccggtgcagccgggctcaggggagaggcaggttcagaccttggggggttcaaa
ggtcagcgtggtttacccggtgacgacggcctcgttggttatcatggagttccaggaaca
cctggcagtccaggcggctgtagtccgacaggagatggaggacaggtggatgtaacaggt
ctttgcaaggcttttccaggacctcctgggcctcctggacttccaggacccaatggatca
ccaggtttccaaggtcttcctggccaaaaaggaacaacgggttcatacggagtaaaagga
gagaaaggagaacaaggagatcaaggcctgggtggtcgtcctggaccaccaggttttgcg
ggcccccgtggagacttgggagttcctggcatcaaaggatcagttggagtccctggttcc
tctggtatgccgggcaggtacgggatacagggtgagaagggtgttcacggagaaatctta
ggagcatcatttggaccgcccggtgatccaggacggtccgggcttcaaggagataagggc
caaagtggagatccaggcgagcaaggctatccaggaatggacggcatgcctggtatgatt
ggcttcaaggggttgagtggccctgcaggcctggaggggaagttaggaaaacctgggcca
gcaggcaattatggcttccctggtgatcctgggagaggaggttcacctgggccacatggt
gctacaggacagccaggtgtgactggtgaaaggggaaccgaaggaaacccgggccctcca
ggtccagcaggattaaaggggatcccaggggcatacggtgaggacggtgccatcggagat
tacggccaaccaggtaatccgggacagccaggtccaggcggacacccaggacttccagga
atgaaggggtacaaaggctcccacggcatgtcaggttttttgggggtcaagggtgaacaa
gggttggctggcttcagtggctcgaaaggagagtctggagtgctgggcctacttggccca
aaaggagtggaaggccaaagtggagaaaaaggtgatcgtggtctgaggggaccgcctgga
gagaagcctcaaatccccgctcaaatgattgttgacatgaagggaaccaaaggagaatat
ggaaagtttggaaatcaagggttcgttgggccaagaggtactaagggtttccctggtgtg
ccgggcttcgagggaactcacggtcttcctggagaccccagcagtaagaaaggttattat
ggagagccaggtgcacaggggctaccaggggtcaaaggaatgccggggccaactgggaac
cgaggaattacaggtttcgagggaatgtctggcaacaagggaattaaaggaagtcccgga
gcctatggtgcatcaggtgatgaaggaaggaagggacctaaaggtgagaaaggccttatt
atagacataccaggatctactgggttgagaggagaggatggaattccaggagacccaggt
caggaaggattaagtggaccgacaggtgacaggggtgttcctggttttgatggtatcaaa
ggtaaaaagggcacgtcaggttttccaggaatagcaggatacccaggctcagacgggcaa
aagggcactcctggtaaccaaggccaaaagggctttcctggaactcctggaaaagaagga
cacccaggctctcctggcttcccaggaaacaagggttaccctggcttgaagggtctttat
ggactatatggattgaaaggacaaaaggggctcacaggaacaccaggtctggacaacttt
ggaccagctggggagtcgggacctacaggacagaaaggagagagcggtgaccccaacaat
cagccaggttttccaggcacagcgggtttgaagggctttcaaggacccctaggtgaccat
ggtcaaccgggactgccgggactccgaggcccggaaggaccagacgggaccccagacaaa
ccaggaccaggcggagagcccggctttggagggcctgcagggtaccgaggttttcctgga
gcccaagggactcctggtgtggatgctccaccaggagaaaagggtgttccaggatcagat
gggtttcctggatttcctggtgcgaaaggattcaaaggagattatggtccaactggatac
agggggcccaatggtgtttctggaaagaaaggagtgaaaggagggcaaggattgatggga
gttcctggcacaattggtgtaaagggagaaagaggaccagctggtcccaaaggaggcacc
ggactcacaggtgttcctggaccccccggcaaacagggtcttcctccaattcccaccagg
gttccaggagagaggggtccctctggaccacagggtatccaaggaccaaaaggaggtaaa
ggagaaacaggaccccagggcccccctgggaattcagggttcatgggacccatcgggcag
aaaggcatgcctgggattagtggtacaccgggaatgcctggtttccgtggagagcttgga
caagtgggccaccctggtctgcaaggcatggaaggtcaccgtggcaaccctggtatccag
gggttacctggtatgcctggccgcagtgtcagcgtgggctacttgctggtgaaacacagt
cagtcggaacagacacccatgtgtcctgtgggtatgtccaaactgtgggacggctacagc
ctgctgtacctcgagggccaggaaaaggcccacaaccaggatctcggtttggctggctcc
tgcctcccacgcttcagcatcatgcccttcctgtactgcaaccccggagacatttgttac
tacgccagcagaaatgataagtcctactggttgtcaaccaccgctcctcttcccatgatg
cctgtagaagaaggagagatcaaaccgtatatcagccgctgctcagtatgtgaagctcca
tcagtcgccatcgcagttcacagtcaggacatcaccatccctcagtgtcctgcgggctgg
agaagcctgtggattggctactcgttcctcatgcacacggcagcaggaaatgaaggcggc
ggtcagtccttgtcgtcgcctggctcctgcctggaggatttccgcacagcgccgttcatt
gagtgtaacggggccaagggcacatgccactactttgctaacaagcacagcttctggcta
acctccgtagagcagtcgttccacaccgagccagcggcagagacgctcaaagcagggcag
ctcctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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