Brachyistius frenatus (kelp perch): 138629772
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Entry
138629772 CDS
T10614
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04382
Cornified envelope formation
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138629772 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138629772 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138629772 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138629772 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfre04147
]
138629772 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
bfre00536
]
138629772 (col4a1)
Exosome [BR:
bfre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138629772 (col4a1)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138629772 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138629772
NCBI-ProteinID:
XP_069569797
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MLLPSGTLLLLAALYSCVHLTGSEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGMH
GPEGPPGPMGPKGDLGEPGATGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGMHGIPGCN
GTKGDRGRDGTSGFPGLQGPPGIPGIPGMKGDPGGVFGITPMKGERGFSGVPGTPGLPGP
PGPTGPPGIRGYQGPKGDAGPPGPPGEKGDKLAFVSEKGDKGDRGYQGPPGPPGLPMGVE
GGHITVHIPGPPGYKGPQGDKGEKGFCTPYLDGVKGDPGPHGQRGKPGKDGDNGLTGEKG
FPGAPGYPASQGEKGEKGPPGYGSGAPGPPGPFGLPGLEGEKGFPGPQGEAGPPGRHIEG
PQGERGPKGDVGGKGDRGVEGESLVGPPGQQGLSGPPGSPGQPIDPNECNIERGAPGPAG
PPGLQGELGQKGDKGDTCAQCDGVGPAGIPGPEGPKGERGPPGPVGGKGEKGLSGLPGQS
GRPGNQGTPGLMGTPGAVGEPGDIFLAPGLKGDKGLPGVAGSPGQPGLDGLPGRDGFPGQ
HGHKGEPASEGIKGERGLDGDPGLIGVPGERGPPGVPGFGRSGEPGEKGSEGRQGLPGTP
GIPGLKGEPGQGVSTPGPQGVPGPRGESGITGLQGDRGHVGDPGLPGFPGDKGESGPPGI
GFPGPTGPKGISGIPGATGLTGEPGKTGQDGLTGKPGPPGQKGEAGRGLPGPKGSQGHPG
ITGYQGEKGNIGLPGVPGREGQTGPPGSQGIQGESGPPGPPGYTGIPGVPGKGSSGAPGP
QGPPGEPGPYGREGVKGEKGYPGPPGLDMPGPQGEKGTLGFPGAPGSKGQHGTPGLPGRD
GQIGNQGFKGEMGVMGTPGVPGFPGSPGKFGPPGLRGDPGITGARGDIGDIGSKGERGEP
GLQGPPGNMSEVDMEHMKGEKGDIGHIGNTGVTGEKGHRGLQGDPGMPGKDGEPGLPGQP
GEKGDLGFPGEPGTIGTTGQKGSVGEMGIPGGAGPKGSKGDFGTPGHPGFRGTDGEKGDS
GSPGEPGIGIPGHPGERGQTGQPGFPGSPGEKGQRGHEGMPGKPGVEGPKGDKGGTGYTG
QGGRPGEKGVSGLPGSAGEPGHDGRPGEGGMQGPLGPHGEKGEPGVDGIPGSSGERGDPG
LPGHGMPGLPGALGIKGDKGSFGFPGTPGNPGVPGIKGDKGLPGPQGHQGEGGERGLPGN
SQEGPKGDRGESGQPGETGSQGAPGPSGVPGRDGQKGVKGDQGLPGFQGESGHKGDPGVN
GLPGQSGLPGIDGQKGERGLQGVPGFPGTKGIVGDGGFQGEVGDRGFPGEKGNDGSPGPP
GPKIFIKGDIGFPGLQGLPGPQGPSGFPGQKGQQGVTGTSGPKGDEGLPGYHGQPGAKGD
GGLPGPQGPRGYPGPPGPDGVPGQVGHPGPSSMDHGFLVTRHSQTVEVPNCPDGTTLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGQSIKPFISRCAVCEAPAMVIAVHSQTIMIPSCPKGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKPVPTT
LKAGNLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcactctgttactgctggcggctctctactcctgtgtacatctg
acaggatcagagggttgcggagcatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgaacgtggatttcctggtcttcaaggtaatatgggattcccagggatgcat
ggaccagaggggcctccagggccaatgggccccaagggagatctgggtgagcctggagct
actggactgaaaggtgtacgaggtcctcctggtctgccaggtttcccaggaaacccagga
ctaccaggtatcaatggaaacgatggtccacctggtatgcatggtatcccaggatgcaat
ggaactaaaggagacagaggaagggatggcacttctggttttcctggtcttcaagggcct
cctggcatcccaggaattcctggaatgaagggtgaccctggtggtgtgtttgggattacc
cccatgaagggagagagaggattctctggtgtacctggaacacctggattacctggccct
cctggacctaccggacctccaggaatccgtggttaccagggaccgaagggtgacgctggc
ccccctggccctcctggagagaagggtgacaagctggcctttgtgagtgagaaaggagat
aagggtgaccgaggatatcagggcccaccgggcccccctggactcccgatgggagtggaa
ggaggacatatcacagtgcacatacctggaccaccggggtacaaaggacctcagggagat
aaaggagaaaaaggcttttgcaccccttatcttgatggtgtcaaaggtgatcccggccca
catggacaaagaggtaaacctggtaaagatggagacaatgggctaacgggtgaaaaaggt
tttcctggcgctcctggataccccgcttcccagggtgaaaaaggagaaaaaggaccacct
ggttatggtagtggtgcacctggccctccaggcccctttggtctcccagggttggaagga
gaaaaaggctttcctggtcctcagggagaggcaggtcctccaggccggcacattgaagga
cctcagggagagaggggcccgaagggagatgtgggtggaaagggagacaggggtgtagag
ggagagtctcttgttggtcctccaggacaacaagggctcagtggaccacctggatcacct
ggacaaccaattgaccccaatgaatgtaacattgagaggggagctcctggccctgctgga
cctccaggattacaaggggaactgggacagaaaggtgacaaaggagatacctgtgctcaa
tgtgatggcgttggccccgctggaatacctggccccgagggcccgaaaggagagcgagga
cctcctggtccagtgggtggcaaaggagaaaagggtctttctggacttcccggacaatct
ggaagacctggtaatcaaggaacacctgggttgatggggacccctggtgctgttggcgag
ccaggagatattttcttagctcctggtctgaagggggacaaaggtcttcctggtgttgct
ggttcaccgggacagccagggctggatggactaccagggagagatggtttcccgggtcaa
catggacacaaaggagaacctgccagtgagggcatcaagggtgaacgtggactagatgga
gaccctggtcttattggggtcccaggagagaggggtccacctggtgtgccaggttttggc
cgatcaggggagcccggagagaagggcagtgaggggagacagggacttcctggaactcct
ggaataccaggtttaaagggtgagcccggtcaaggtgtgagcactcctggacctcagggg
gtccctggaccacgaggagaatccggcataactggactgcaaggtgacagaggccatgta
ggagatccagggttgccaggttttcctggagacaaaggtgaaagtggacctcctggaatc
ggatttccaggcccaactggtcctaaaggaatcagtggaattccaggagctacaggatta
acaggagagccaggaaaaacaggacaggatggcttgacaggaaaacctggtccacctgga
caaaaaggtgaagctggacggggtcttccaggtccaaaaggttcacagggtcacccagga
atcactggttaccagggagagaagggtaacattggactgcctggtgttcctggacgagaa
gggcagacaggaccacccggatctcagggcatccaaggtgagtcggggcctccagggcct
cctgggtatactggcataccaggtgttccaggaaaaggctcgtctggagctcccggacca
caaggaccacctggagagcctggaccatacggaagggaaggtgtaaaaggagaaaagggc
tacccaggtcctcctggtctagacatgccggggcctcagggagagaaggggacccttggg
ttccccggagccccaggttcaaaaggacagcatgggactccaggcttaccaggcagggat
ggacaaattggaaaccaaggttttaaaggtgaaatgggggtcatgggaacaccgggagta
ccaggatttcctggatcacctggtaaatttggacctcctggtctgagaggtgatcctggt
attactggagcaagaggtgatattggagacattggatctaaaggtgaaagaggagagcca
ggtcttcagggacctcctgggaacatgagtgaagttgacatggagcacatgaagggggag
aaaggagacatcggacacataggtaacactggggtcactggagagaagggccaccgtgga
cttcaaggagaccctggaatgccgggcaaagatggagagcctggattacctggacaacca
ggtgaaaagggagatcttggttttcctggagagcctggcactataggaacaaccggacag
aaaggcagtgtgggagagatgggaataccaggtggggctggtccaaagggtagtaaagga
gattttggtacaccaggacatcctggattcagaggcacagatggagaaaaaggagatagc
ggatcacctggtgagccaggtattggcatccccggacatccaggagaaaggggtcagacc
ggccagccaggattcccgggatcacctggagagaagggtcagaggggtcatgagggtatg
cccggcaagccaggagttgaaggacccaagggagacaaaggagggactgggtatacaggt
cagggaggtagaccaggggagaagggtgtctcggggcttcccgggtctgcaggagaacct
ggtcatgacggtcggcctggcgagggtggcatgcagggacctcttggtcctcatggagag
aagggagagcctggagtggatggcatcccgggatcctcaggggagagaggagacccaggt
ctacctggccacgggatgccagggctgcctggagcgcttggtatcaaaggtgacaaaggt
agttttggcttccctgggactccaggtaatccaggtgtccctggtatcaaaggtgacaag
ggacttcctggcccacagggacaccagggtgagggaggagagaggggtcttccaggtaac
tctcaagaaggccctaaaggagacaggggagaatcaggacaacccggagaaacaggatca
caaggagcaccaggaccttctggcgtgccaggacgagatggtcaaaagggagtgaaggga
gatcagggtcttcctggtttccagggagagtcgggacacaagggtgaccctggagttaac
ggacttcctggacaatctggccttccaggtatcgatggtcagaagggagagagaggatta
cagggtgtccctggcttcccaggtacaaagggaattgtcggggacggtgggttccaagga
gaagttggagacagaggattcccaggagagaaaggtaatgatggctctcctggtcccccc
ggacccaaaatcttcatcaaaggagacattggttttccaggacttcagggcctgccggga
cctcaggggccgtctgggttccctggacagaaaggacagcaaggtgtgacaggtacttca
gggccaaaaggtgatgaaggtctccctggatatcacggtcagcctggagccaaaggagac
ggcggcctgccggggccacaaggacccagaggataccccgggcccccgggacctgatggt
gttccaggtcaagtgggtcatccaggcccctcatccatggatcacgggttcctggtaaca
cgtcatagccaaacagtggaggttccaaattgtccagacggaactacgctcatatatgac
ggctactccttgctctatgtacaaggcaatgaacgctctcatggccaagacttaggtacg
gcaggcagctgtctaagaaagttcagccccatgcccttcctgttctgcaacatcaacaac
gtgtgcaacttcgcctctcgtaatgattactcctactggctcacctcacctgagcccatg
ccaatgagcatggcgcccatcactggtcaaagcattaaacccttcatcagccggtgtgct
gtatgtgaagccccagccatggtgatagcagttcacagtcagaccatcatgattccatct
tgccctaaaggctgggactctctgtggattggctactcctttgtcatgcacaccagtgcc
ggtgctgagggttcgggtcaggctttggcctctcctggttcctgcctggaggagttccgc
agtgctccattcattgagtgtcacggtcgaggaacctgcaactattacgccaactcctac
agcttctggctcgctaccatcgaagatgaagagatgtttacgaaacccgtcccgacaacg
ctaaaagcaggcaatctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
taa
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integrated database retrieval system
