Brachyistius frenatus (kelp perch): 138629949
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Entry
138629949 CDS
T10614
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04518
Integrin signaling
bfre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138629949 (col9a1b)
04518 Integrin signaling
138629949 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138629949 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138629949 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bfre00535
]
138629949 (col9a1b)
Proteoglycans [BR:
bfre00535
]
Extracellular matrix (ECM) proteoglycans
Others
138629949 (col9a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138629949
NCBI-ProteinID:
XP_069570059
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MAGAPSARGPILVLLLQLVLICSSQRSQGTPGPPGPAGVPGIDGIAGERGEDGEDGPTGP
NGDAGKPGSSGLPGIPGNDGLTGPIGDLGPDGPPGQKGEPGTTGPRGLPGVGPDGSPGPL
GPGGLPGEVGKVGSPGSMGVRGPQGPLGPTGTRGAAGMLGNTELCPNSCPPGTSGHPGLP
GMKGHKGVKGEAGEPGKQGHKGEEGYQGSLGEVGSQGPTGPQGIRGATGMMGPKGEMGTR
GHDGDPGPQGVAGATGDLGQRGVMGEPGPNGETGVQGTRGITGLPGPKGDSGLPGVDGRE
GIPGMPGAKGGIGNSGVPGEVGLQGLPGLPGAPGPKGLGGLKGDSGQDGLPGTMGSTGKP
GERGEQGELGPVGPIGEPGDVGERGPLGPAGKPGPRGSKGDPGLSGLPGPPGLPGVKGER
GERGETGPKAEQGEQGDEGNPGDKGDVGEAGEPGSKGETGNPGEAGRRGPEGSRGQPGIE
GPPGTPGPRGMQGNRGAPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GIAGLPGKPGPPGSPGAPGDNGFPGQAGMRGLPGLKGPPGHLGQKGPKGEMGDRGSRGPT
VRGPKGQPGPPGLPGEPGKPGYGQDGRDGQRGPPGVPGQLGVPGPPGAAGPNGYCDPSAC
NLQAGAAHQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctggggccccaagcgctagagggccaattctggtgctgctcctgcagctcgtcctt
atttgctcctctcaaaggagccaaggaacccctggcccccctggacctgcaggtgtacca
ggaattgatggcattgctggtgaaaggggagaggatggcgaggacggtccaactggacct
aatggagatgcaggtaaacccggctcctctggactacctggaattcctggaaatgacggt
ttgacgggccccattggagatcttgggcctgacggtccccctggacagaaaggggaacct
ggtacaactggacctcgtggactacctggtgttgggccagatggatcccctggaccactg
gggcccggaggacttccgggtgaagtgggaaaagttggatcacctgggtccatgggtgtg
agagggccacagggacctctgggaccgacagggaccagaggtgcagctggaatgcttggc
aataccgaactgtgtccaaactcgtgtccaccggggacttctggacatcctgggcttcct
ggcatgaagggccacaaaggtgtaaaaggtgaagcaggggaacctgggaaacaagggcac
aagggtgaggaggggtaccagggcagtctaggggaggtcggctctcaaggaccaacggga
cctcagggaattcgtggagccacaggaatgatgggccccaagggagagatgggcactcga
ggtcatgatggagatccaggtccccagggtgtcgcaggggcaactggagatctaggccag
agaggcgtaatgggcgagcctgggcctaatggtgaaacgggtgttcaagggaccagagga
ataacaggccttccaggtcccaaaggagactctggcttaccaggtgtggatggtcgtgag
ggtattcctgggatgcctggagcaaagggaggcattgggaattcaggtgttcctggagag
gttggacttcaggggcttcctggtctgcctggtgcacctggaccaaaaggcttgggtggc
ctaaagggagacagtggtcaggacggcctccctggaacaatgggatccaccggaaaacca
ggagagcgaggagaacaaggagagttgggacctgttggacccatcggggagcctggagac
gttggggagcgaggtccgttaggtccggctggcaaaccaggaccccggggatccaaaggt
gaccctggtctttctggtctcccaggtcctcctggcctgcctggggtgaaaggagagcgg
ggagaacgtggagaaacaggacccaaagcagagcagggagaacaaggtgacgagggaaat
cctggagacaaaggagatgttggtgaggcaggagaacctgggtcgaagggagagactggt
aaccctggtgaggctggcagaagaggtcccgagggaagtcgaggccaacctggcattgaa
gggccgcctggcacacctggaccacggggcatgcaggggaacaggggtgcacctggagtc
agagggtcccagggtcctgcgggtaaagagccgagtgatcagcacatcaaacaagtttgc
atgcgagtcatgcaagaacaactggctcagttagctgctagtttaagaaggccagagtct
gggatagctggcctacctggaaaacctggacctccagggtcccctggggctccaggagac
aatggcttccctgggcaggctggaatgagaggccttccagggctcaaagggccaccagga
cacttgggacagaaaggacccaaaggtgaaatgggagacagagggtccagagggccaact
gtgcgaggacctaaaggtcagccaggacctcctggacttcccggggagccaggcaaacct
ggctacggtcaggatggtcgggacgggcagaggggacctcctggtgttcctggacagctc
ggggtgcctgggcctcctggtgcagctggtcctaatggttactgcgacccatcagcctgc
aacctccaggctggggccgcccaccagtctctggatgtgaagggacctgcagggaactaa
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integrated database retrieval system
